BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2726.p (555 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980772|ref|YP_001354253.1| malonate decarboxylase alpha su... 979 0.0 gi|152982502|ref|YP_001351794.1| malonate decarboxylase alpha su... 800 0.0 >gi|152980772|ref|YP_001354253.1| malonate decarboxylase alpha subunit [Janthinobacterium sp. Marseille] Length = 555 Score = 979 bits (2532), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/555 (83%), Positives = 507/555 (91%) Query: 1 MSSSERVWNARQKNREQRLARATAALGSQLQGKIAPADQLGELLYAVLENGDRVCVEGNN 60 M S+R W+ RQKNR+ RL RA LG+ L GK+ A+++ ELL++V+E+GDRVC+EGNN Sbjct: 1 MQGSKREWDHRQKNRDARLVRAAGKLGAALSGKLVQAERMVELLHSVIESGDRVCLEGNN 60 Query: 61 QKQADFLAKGLAALDPARVNGLHMLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAK 120 QKQADFLA L LDPA+V+ LHML SVLALPEHLD+FEKGIA +LDFSFSGPQ +LA+ Sbjct: 61 QKQADFLAAALCQLDPAQVHDLHMLQSVLALPEHLDLFEKGIASKLDFSFSGPQGAQLAR 120 Query: 121 LASAGKLNIGAIHTYLELFGRYFVDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEAT 180 L +AGK+NIGAIHTYLELFGRYF+DLTPRVAL+AAQAADRHGNLYTGPNTEDTPAI EAT Sbjct: 121 LVAAGKINIGAIHTYLELFGRYFIDLTPRVALIAAQAADRHGNLYTGPNTEDTPAIVEAT 180 Query: 181 AFSSGIVIAQVNEIVDELPRVDIPADWVSFAIKAPTPHYIEPLFTRDPAQISEIQVLMAM 240 AF +GIVIAQVNEIVD LPRVD+PADWV F ++APTPHYIEPLFTRDPA ISE+QVLMAM Sbjct: 181 AFKNGIVIAQVNEIVDVLPRVDVPADWVDFVVQAPTPHYIEPLFTRDPALISEVQVLMAM 240 Query: 241 MAIKGIYAEYGVQRLNHGIGFDTAAIELILPTYAESLGLRGKICKHWALNPHPALIPAIE 300 MAIKGIYAEYGV+R+NHGIGFDTAAIELILPTYAESLGLRGKI +HWALNPHPALIPAIE Sbjct: 241 MAIKGIYAEYGVERINHGIGFDTAAIELILPTYAESLGLRGKIGRHWALNPHPALIPAIE 300 Query: 301 AGFVESVHSFGSELGMEDYIRARPDVFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQI 360 AGFVESVHSFGSELGME YI +RPDVFFVG DGSMRSNRA Q AGHY CDMFIGSTLQI Sbjct: 301 AGFVESVHSFGSELGMERYIESRPDVFFVGRDGSMRSNRAMCQVAGHYACDMFIGSTLQI 360 Query: 361 DLQGNSSTATLGRIAGFGGAPNMGADARGRRHASEAWLKAGQQARAGRNTIPRGQKLVVQ 420 DLQGNSSTATLGRIAGFGGAPNMG+DARGRRH+S AWLKAGQQA+ G+ IPRGQKLVVQ Sbjct: 361 DLQGNSSTATLGRIAGFGGAPNMGSDARGRRHSSPAWLKAGQQAQQGKKKIPRGQKLVVQ 420 Query: 421 TVETFREHMQPAFVEKLDAWQLGEQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEE 480 VETFREHMQPAFVE+LDAWQL EQAK+ IPPVMIYGDDVTHILTEEGIANLLLCRTEEE Sbjct: 421 MVETFREHMQPAFVEELDAWQLAEQAKLDIPPVMIYGDDVTHILTEEGIANLLLCRTEEE 480 Query: 481 REQAIRGVAGYTAVGMGRDKRMVENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVR 540 REQAIRGVAGYTAVGM RD++MVENLRDRGII RAED+GIDKRMATRDLLAAKNMKDLVR Sbjct: 481 REQAIRGVAGYTAVGMARDRKMVENLRDRGIILRAEDMGIDKRMATRDLLAAKNMKDLVR 540 Query: 541 ASGGLYNPPKRFRNW 555 ASGGLY PPKRFRNW Sbjct: 541 ASGGLYAPPKRFRNW 555 >gi|152982502|ref|YP_001351794.1| malonate decarboxylase alpha subunit [Janthinobacterium sp. Marseille] Length = 552 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/549 (68%), Positives = 447/549 (81%), Gaps = 6/549 (1%) Query: 8 WNARQKNREQRLARATAALGSQLQGKIAPADQLGELLYAVLENGDRVCVEGNNQKQADFL 67 W+ +N RL R S GK+ A+ + LL+AV+E+GDRVCVEGNNQK ADFL Sbjct: 9 WDTLARNTATRLKRG----ASHANGKVVAAENIAALLHAVIESGDRVCVEGNNQKHADFL 64 Query: 68 AKGLAALDPARVNGLHMLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAKLASAGKL 127 A L+ +D V+ LH++ S LAL HLDVFE+G+A RLDF +SG Q RLA+L AGK+ Sbjct: 65 AMALSKMDANLVHDLHIIQSNLALASHLDVFERGVASRLDFCYSGDQGVRLARLIKAGKI 124 Query: 128 NIGAIHTYLELFGRYFVDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEATAFSSGIV 187 N+GAIHTYLEL+GRYF+DLTPRV+L+AAQ+AD +GNLYTGPNTEDTPA+AE TAF +GI+ Sbjct: 125 NVGAIHTYLELYGRYFMDLTPRVSLIAAQSADANGNLYTGPNTEDTPAVAEGTAFKNGII 184 Query: 188 IAQVNEIVDELPRVDIPADWVSFAIKAPTPHYIEPLFTRDPAQISEIQVLMAMMAIKGIY 247 IAQVNEIVD++PRVD+P DWVS+ ++AP PHYIEP+FTRDPAQI+E Q+LMAMM IKG+Y Sbjct: 185 IAQVNEIVDKVPRVDVPGDWVSYVVQAPKPHYIEPIFTRDPAQITETQILMAMMVIKGLY 244 Query: 248 AEYGVQRLNHGIGFDTAAIELILPTYAESLGLRGKICKHWALNPHPALIPAIEAGFVESV 307 A YGV RLNHGIGFDTAAIELILPTYAESLGLRGKIC + +NP P LIPAIE+GFV+ + Sbjct: 245 APYGVTRLNHGIGFDTAAIELILPTYAESLGLRGKICNYMTVNPCPTLIPAIESGFVKGI 304 Query: 308 HSFGSELGMEDYIRARPDVFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQIDLQGNSS 367 H GSELGME+Y+RARPDVFF GPDGSMRSNR F Q AGHY D+FIGSTLQ+D QGNSS Sbjct: 305 HCAGSELGMEEYVRARPDVFFNGPDGSMRSNRVFCQIAGHYS-DLFIGSTLQVDTQGNSS 363 Query: 368 TATLGRIAGFGGAPNMGADARGRRHASEAWLKAGQQ-ARAGRNTIPRGQKLVVQTVETFR 426 TATL RI GFGGAPN G+++R RRH S WLKAGQ+ A A T+PRG+KLVVQ VE+FR Sbjct: 364 TATLNRITGFGGAPNFGSESRARRHVSYPWLKAGQESAEATGATMPRGRKLVVQMVESFR 423 Query: 427 EHMQPAFVEKLDAWQLGEQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQAIR 486 E M P F EKLDAWQL E + +PPVMIYGDDVT I+TEEGIA+L C +EREQA+R Sbjct: 424 EKMSPTFTEKLDAWQLMEDLSLDLPPVMIYGDDVTQIVTEEGIAHLHKCSNPQEREQAVR 483 Query: 487 GVAGYTAVGMGRDKRMVENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVRASGGLY 546 GVAG+TAVGM RD+R V+NLRDRG+I+R ED+G+D +ATRDLLAAK+MKDLVR SG LY Sbjct: 484 GVAGFTAVGMKRDQRAVDNLRDRGVIQRPEDIGVDVSLATRDLLAAKSMKDLVRWSGNLY 543 Query: 547 NPPKRFRNW 555 PP RFRNW Sbjct: 544 QPPNRFRNW 552 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,339,665 Number of extensions: 58807 Number of successful extensions: 176 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 2 Length of query: 555 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 467 Effective length of database: 895,685 Effective search space: 418284895 Effective search space used: 418284895 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)