BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2725.p
         (104 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980773|ref|YP_001354252.1| malonate decarboxylase subunit ...   143   2e-36
gi|152982264|ref|YP_001351795.1| malonate decarboxylase delta su...    84   2e-18

>gi|152980773|ref|YP_001354252.1| malonate decarboxylase subunit
           delta [Janthinobacterium sp. Marseille]
          Length = 104

 Score =  143 bits (360), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/100 (69%), Positives = 78/100 (78%)

Query: 1   METLTFRFEHGSRRLKAAPELVGVVSSGNLEVLIENAALNGACAIEVKTAARGFGTIWEA 60
           METL FRFE G RRL     +VGVVSSGNLEVLIE+  LNG C +E+KTAA GFG IW+A
Sbjct: 1   METLNFRFEKGDRRLALQANMVGVVSSGNLEVLIESIDLNGGCEVEIKTAAVGFGAIWQA 60

Query: 61  VMTDFQQRWQLADTRISINDMGATPAVVSLRLDQAVEAMV 100
           V+ DF  RW L D RI IND GATPAVVSLRLDQAVE+++
Sbjct: 61  VVADFHARWSLQDVRILINDAGATPAVVSLRLDQAVESVM 100


>gi|152982264|ref|YP_001351795.1| malonate decarboxylase delta
          subunit [Janthinobacterium sp. Marseille]
          Length = 104

 Score = 83.6 bits (205), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 53/77 (68%)

Query: 21 LVGVVSSGNLEVLIENAALNGACAIEVKTAARGFGTIWEAVMTDFQQRWQLADTRISIND 80
          LVGVV SGNLEVL E A LN      ++T+  GF   W+AV     +R++LA+  I+IND
Sbjct: 22 LVGVVGSGNLEVLFEPAELNDKVKFVIETSVHGFDETWQAVTRSCAERYRLANLVITIND 81

Query: 81 MGATPAVVSLRLDQAVE 97
           GATPAVVSLRL QAVE
Sbjct: 82 AGATPAVVSLRLMQAVE 98


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 231,249
Number of extensions: 7783
Number of successful extensions: 19
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 34
Effective length of database: 962,231
Effective search space: 32715854
Effective search space used: 32715854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 122 (51.6 bits)