BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2724.p
         (298 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980774|ref|YP_001354251.1| malonate decarboxylase beta sub...   420   e-119
gi|152982573|ref|YP_001351796.1| malonate decarboxylase beta sub...   349   1e-97

>gi|152980774|ref|YP_001354251.1| malonate decarboxylase beta
           subunit [Janthinobacterium sp. Marseille]
          Length = 299

 Score =  420 bits (1079), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/284 (73%), Positives = 235/284 (82%), Gaps = 2/284 (0%)

Query: 4   SYLEATARERILAVLDAGSFKELLPPAQRVVSPHLGQLDAPVSFDDGVIIGEGLLGGRAV 63
           SYLEA AR+RI A+LDAGSF+E LPP+ ++VSPHL QLD P SFDDG++IG G L GR V
Sbjct: 3   SYLEANARQRIHALLDAGSFEEFLPPSLQIVSPHLAQLDTPASFDDGIVIGRGTLQGRKV 62

Query: 64  MAAAQEGGFMGGAVGEVHGAKLVGLLKRAIARQAAGVILLLETGGVRLHEANAGLIAVSE 123
           +AAAQEGGFMGGAVGEVHGAKLVGLLKRA++    GVILLLETGGVRLHEANAGLIAVSE
Sbjct: 63  LAAAQEGGFMGGAVGEVHGAKLVGLLKRAVSEGVDGVILLLETGGVRLHEANAGLIAVSE 122

Query: 124 VMRAVLEARAAGIPVIVLVGGANGCFGGMGIVARCANTIIMSEEGRLAMSGPEVIETANG 183
           VMRAVL+ RAA IPVIVLVGG NGCFGGMGIVA CAN I+MSEEGRLAMSGPEVIET +G
Sbjct: 123 VMRAVLDTRAANIPVIVLVGGTNGCFGGMGIVACCANDILMSEEGRLAMSGPEVIETTHG 182

Query: 184 VEEFDSRDRALVWRTTGGKHRYLIGDCQQLVGDDTEAFRAAAIAALA--QAGDVPLTLAA 241
           VEEFDSRDRALVWRTTGGKHRYL+GDC  ++ DD  AFR AA   L   Q G   LTL  
Sbjct: 183 VEEFDSRDRALVWRTTGGKHRYLLGDCSAVLPDDIAAFRQAAFDTLQQYQQGSAELTLED 242

Query: 242 LEAEQDMLRRRIAAFGHAEDPMDIWAELGVSQPEVVPMLEAGAF 285
           LE+E  +L RR+ AFG+  +PMDIW+ LGV+ P ++PMLEA AF
Sbjct: 243 LESEHTLLNRRLQAFGNFSEPMDIWSRLGVADPGILPMLEAQAF 286


>gi|152982573|ref|YP_001351796.1| malonate decarboxylase beta
           subunit [Janthinobacterium sp. Marseille]
          Length = 299

 Score =  349 bits (896), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 174/290 (60%), Positives = 217/290 (74%), Gaps = 2/290 (0%)

Query: 4   SYLEATARERILAVLDAGSFKELLPPAQRVVSPHLGQLDAPVSFDDGVIIGEGLLGGRAV 63
           S+LE TAR+RI  +LD  SF E+LPPA+R  SPHL  L  PV+FDDG++IG GLL G  V
Sbjct: 7   SFLERTARQRIADLLDNDSFSEILPPAERHFSPHLPVLGQPVAFDDGIVIGSGLLSGAKV 66

Query: 64  MAAAQEGGFMGGAVGEVHGAKLVGLLKRAIARQAAGVILLLETGGVRLHEANAGLIAVSE 123
           + AAQE  FMGG+VGE+HGAKL GLL+RA+ ++ A V+LLL+TGGVRLHEANAGLIA+SE
Sbjct: 67  LIAAQEPAFMGGSVGEIHGAKLTGLLERAVQQRPAAVLLLLDTGGVRLHEANAGLIAISE 126

Query: 124 VMRAVLEARAAGIPVIVLVGGANGCFGGMGIVARCANTIIMSEEGRLAMSGPEVIETANG 183
           + RAV E R AGIPVIVL+GG+NGC+GG+GIVA+C + +I+SEEGRL++SGPEVIE A G
Sbjct: 127 IQRAVFEVRHAGIPVIVLIGGSNGCYGGIGIVAKCCDHMIISEEGRLSVSGPEVIEAAKG 186

Query: 184 VEEFDSRDRALVWRTTGGKHRYLIGDCQQLVGDDTEAFRAAAIAALAQAGDVPLTLAALE 243
           VEEFD+RDRALVWRT GGKHRYL+GD   +V DD  AFR AAI+ L  +   PLTL ++ 
Sbjct: 187 VEEFDARDRALVWRTMGGKHRYLMGDADLIVPDDIAAFRDAAISLLGASR--PLTLESIT 244

Query: 244 AEQDMLRRRIAAFGHAEDPMDIWAELGVSQPEVVPMLEAGAFTAMAERLR 293
            E   L+ R+  F    D   IW ELGV+  + VP+ E   F  M+  +R
Sbjct: 245 QEHQALQNRMQRFSACADATQIWQELGVTDAKNVPLAEIPEFLEMSAHVR 294


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 723,093
Number of extensions: 32431
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 215
Effective length of database: 914,170
Effective search space: 196546550
Effective search space used: 196546550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)