BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2723.p
         (246 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980775|ref|YP_001354250.1| malonate decarboxylase gamma su...   342   1e-95
gi|152982699|ref|YP_001351797.1| malonate decarboxylase gamma su...   226   7e-61

>gi|152980775|ref|YP_001354250.1| malonate decarboxylase gamma
           subunit [Janthinobacterium sp. Marseille]
          Length = 238

 Score =  342 bits (877), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 166/230 (72%), Positives = 191/230 (83%)

Query: 10  VDWRALAQELFPQGHAITEQEYFLSGTAQVDGSTVTVVGTTGHTPIGIEIALAQASVILQ 69
           + W+ LA +LFPQGH I E +YFL GTA+VD  TV V+GTTGHTPIG+EIALAQA+ IL 
Sbjct: 1   MKWQTLATQLFPQGHDIVEHDYFLRGTAKVDQQTVAVIGTTGHTPIGVEIALAQANAILD 60

Query: 70  TVREHPGRPIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRVIGLVYDQAL 129
           T+R  PGRP+VILVDTQGQRLR+RDEMLGIN YMAHLGKC+++ARR+GH+VIGLVYDQAL
Sbjct: 61  TMRNFPGRPLVILVDTQGQRLRYRDEMLGINRYMAHLGKCIDVARRRGHKVIGLVYDQAL 120

Query: 130 SGGFITSGLIADACYALPAATIRVMGLPAMARITKVPQERLTELAKSNPVFAPGPENYLR 189
           SGGFITSGL+ADACYALP A IRVMGL AMARITKVP ERLTELA++NPVFAPG ENYL 
Sbjct: 121 SGGFITSGLMADACYALPEAEIRVMGLAAMARITKVPLERLTELAQANPVFAPGAENYLN 180

Query: 190 MGGVAEIWNGDLAQALSQALAVDRSADTRAAIGLERGGRKWAQRVIEAVV 239
           MGGV  IW GDL   L++AL    S D R+A GLERGGRK +  V + V+
Sbjct: 181 MGGVEAIWQGDLESCLARALQQADSIDHRSARGLERGGRKMSLPVTQLVL 230


>gi|152982699|ref|YP_001351797.1| malonate decarboxylase gamma
           subunit [Janthinobacterium sp. Marseille]
          Length = 233

 Score =  226 bits (577), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 104/229 (45%), Positives = 153/229 (66%)

Query: 10  VDWRALAQELFPQGHAITEQEYFLSGTAQVDGSTVTVVGTTGHTPIGIEIALAQASVILQ 69
           ++W+ L  +LFPQGH +      ++G  ++   TV VVGT  H  IG++IAL  +  ++ 
Sbjct: 2   LEWKELCDQLFPQGHTVKADGQVVTGQGRIGDETVAVVGTLDHAAIGVDIALQLSEAVID 61

Query: 70  TVREHPGRPIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRVIGLVYDQAL 129
            +++ PG PI++LVDTQGQ+L  RDE+LG + ++AHL KC  +AR +GH+++ +VY +A+
Sbjct: 62  IMKQQPGAPILMLVDTQGQQLSRRDELLGNSPFLAHLAKCFAVARTRGHQLLSVVYSEAV 121

Query: 130 SGGFITSGLIADACYALPAATIRVMGLPAMARITKVPQERLTELAKSNPVFAPGPENYLR 189
           SGGF++ G+IAD  YA+P A IRVM LPAM+RITK+P E L  L +++P+  PG  N++ 
Sbjct: 122 SGGFLSLGMIADETYAVPGAQIRVMALPAMSRITKLPLEELEALCRTSPILGPGAHNFVA 181

Query: 190 MGGVAEIWNGDLAQALSQALAVDRSADTRAAIGLERGGRKWAQRVIEAV 238
           +G V EIW G L Q L  ALA   + D R  +G  RGGR  A R+ + V
Sbjct: 182 LGAVEEIWEGPLDQCLLTALAKKNNLDKRRELGASRGGRTGAARIAQLV 230


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 551,968
Number of extensions: 20807
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 165
Effective length of database: 921,564
Effective search space: 152058060
Effective search space used: 152058060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)