BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2722.p
         (243 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980776|ref|YP_001354249.1| malonate decarboxylase epsilon ...   135   2e-33
gi|152982249|ref|YP_001351798.1| malonate decarboxylase epsilon ...    95   4e-21

>gi|152980776|ref|YP_001354249.1| malonate decarboxylase epsilon
           subunit [Janthinobacterium sp. Marseille]
          Length = 223

 Score =  135 bits (341), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 12  RHHLLWLSESAWVRLQAQCSDARQVAALAHWQRMRWPVIVRRLEGGVADDEICVGIALPP 71
           RH  +WLS   W R  A   D   +  +  W    WP++VRR + G   + + VG+ALPP
Sbjct: 4   RHKRIWLSSRGWQR-AAAAVDKVHLPDMERWAANDWPLVVRRSDVGFEVESLAVGLALPP 62

Query: 72  DAQ-GNKPRIALRVQAQEVVARHAPFLLRDIVAAHLSGLPSAWQSGLDQLQQHMARAGIT 130
           DA  G K RI L V   +V     P     + AA  S LP AWQ     L   +  A + 
Sbjct: 63  DADSGRKVRIPLSVHPNDVARHETPLAF--VHAA--SALPLAWQPAFADLSHELTAAQLE 118

Query: 131 LAVFGSLAWQALTAEPYLRSSSDIDLLFQPRSLAQLEAGVRLLAWQAMFLPLDGEVMFPE 190
             V+GS+A QA+T  PY+ ++SDID+LF P + AQL+ G+ LL   A  LPLDGE++FP 
Sbjct: 119 FRVYGSVALQAMTGLPYVTATSDIDILFYPCTHAQLQQGLHLLQLYAQSLPLDGEIVFPS 178

Query: 191 GAAVSWKEWRQVAVLGNGGEGRVLVKRAAGVALERVATLIASLPQ 235
           G AV+WKEW  V  + +  + +VLVK    V L  V  L++ L +
Sbjct: 179 GHAVAWKEW--VEAVKSPDKVKVLVKSMRTVNLMDVTALLSELEE 221


>gi|152982249|ref|YP_001351798.1| malonate decarboxylase epsilon
           subunit [Janthinobacterium sp. Marseille]
          Length = 254

 Score = 95.1 bits (235), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 119/236 (50%), Gaps = 34/236 (14%)

Query: 1   MIAP-ASCLAQSRHHLLWLS---ESAWVRLQAQCSDARQVAALAHWQRMRWPVIVRRLEG 56
           MIAP +S     RH  +WL+    +  + LQ    D  Q+ A+        P + R  + 
Sbjct: 27  MIAPQSSSYVFKRHARVWLNWPEAAGLIHLQ----DGVQLEAIHQHAARGLPFVARSRQP 82

Query: 57  GVADDEICVGIALPPDAQGNKPR-IALRV------QAQEVVARHAPFLLRDIVAAHLSGL 109
           G A   + +G+ +P   + + PR +A  V      +A + ++     LL+       + L
Sbjct: 83  GDAPGMVPLGLRMP---RTSNPRSLAFSVPPSAVREATDAMSLAEALLLQ-------TPL 132

Query: 110 PSAWQSGLDQLQQHMARAGITLAVFGSLAWQALTAEPYLRSSSDIDLLFQPRSLAQLEAG 169
           P  W   L  LQ   A+ G+TL ++GSLAWQ  T   YL  +SDIDLL  P SL Q  AG
Sbjct: 133 PGGWYDTLMHLQTDAAQLGLTLRIYGSLAWQCATGTHYLADNSDIDLLLAPESLEQARAG 192

Query: 170 VRLL--AWQAMFLPLDGEVMFPEGAAVSWKEWRQVAVLGNGGEGRVLVKRAAGVAL 223
           +RLL    +   + LDGE++FP+G AV+WKE     +L N     V+VK A G+AL
Sbjct: 193 LRLLEAVEKEGRVRLDGEMIFPDGRAVAWKE-----LLAN--TRLVMVKNAEGIAL 241


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.132    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 630,611
Number of extensions: 26926
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 162
Effective length of database: 921,564
Effective search space: 149293368
Effective search space used: 149293368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)