BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2721.p
         (307 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981591|ref|YP_001354248.1| 2-(5''-triphosphoribosyl)-3'-de...   296   1e-81
gi|152981577|ref|YP_001351799.1| 2-(5''-triphosphoribosyl)-3'-de...   222   3e-59

>gi|152981591|ref|YP_001354248.1|
           2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A
           synthase [Janthinobacterium sp. Marseille]
          Length = 302

 Score =  296 bits (758), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 152/273 (55%), Positives = 192/273 (70%), Gaps = 3/273 (1%)

Query: 27  RAFCRLLARLALRSLHQELVLYPKPGLVSRVDNGSHADMTAETFLRSLFALRHYFFQIAT 86
           R  C   A  A+RSLH ELVLYPKPGLVS +DNGSH+DM A+ F+RSLF+LRHYF Q+A 
Sbjct: 26  RKSCLHTALCAIRSLHAELVLYPKPGLVSPIDNGSHSDMDADLFMRSLFSLRHYFKQMAQ 85

Query: 87  AGLEGAPFHTLQRLAVRAEERMLRATGGVNTHRGAIFALGMLCAAMACCRGRRLPLQPAT 146
           AG +  PF  L+ L ++AE RML ATGG+NTHRGAIF+LG+LCAA   C    LP  P  
Sbjct: 86  AGTQAVPFDVLKDLGLQAERRMLAATGGINTHRGAIFSLGILCAAAGYCHAHSLPPTPDH 145

Query: 147 VRATLLIQWGDALARHSAAIPGESH-SHGQRVAARHAVGGAREEAALGFPSVFEVALPQL 205
           +R  +   WG AL  H  A P  +  S+G RV   +A+ GAR E A GFP+VFE+ +PQL
Sbjct: 146 LRVVVRKLWGTALLDH--ARPSVAKLSNGIRVTHLYAINGARGEGAQGFPAVFEIGVPQL 203

Query: 206 QATLAQGRDAYHARIDTLFALMAQLSDTNVYHRGGAEGAALVRERSAAFLAAGGTARPGW 265
             + A G D   A++D LF+LMAQ+SDTN+YHRGGA+GAALVR  +  F+  GG+  P W
Sbjct: 204 LQSFAAGSDTCGAQVDALFSLMAQMSDTNIYHRGGADGAALVRLAAQDFMQLGGSRHPDW 263

Query: 266 QEDAVDCHRLFVARRLSPGGAADLLAAACLVHQ 298
           +  A+ CH LFV+R LSPGGAAD+L+A+ LV+Q
Sbjct: 264 RATALACHHLFVSRNLSPGGAADMLSASWLVYQ 296


>gi|152981577|ref|YP_001351799.1|
           2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A
           synthase [Janthinobacterium sp. Marseille]
          Length = 284

 Score =  222 bits (565), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/276 (50%), Positives = 168/276 (60%), Gaps = 7/276 (2%)

Query: 21  NAAHEHRAFCRLLARLALRSLHQELVLYPKPGLVSRVDNGSHADMTAETFLRSLFALRHY 80
           NAAH  R   + +AR A+R+L+ E+ LYPKPGLVS+ DNGSH DM A TF++SLF+LRHY
Sbjct: 6   NAAHPLR--TQQVARAAVRALYDEMCLYPKPGLVSKTDNGSHDDMQAATFIKSLFSLRHY 63

Query: 81  FFQIATAGLEGAPFHTLQRLAVRAEERMLRATGGVNTHRGAIFALGMLCAAMACCRGRRL 140
           F  I  AG   A F  L RL + AE  MLRAT GVNTHRGAIF LG+LCAA+       +
Sbjct: 64  FAAIYQAGARNADFAELTRLGLAAEATMLRATSGVNTHRGAIFNLGLLCAALGKA---DV 120

Query: 141 PLQPATVRATLLIQWGDALARHSAAIPGESHSHGQRVAARHAVGGAREEAALGFPSVFEV 200
             +PA +   ++  WG  +    A     S SHG  V  ++AVGGAR EAA GFP VF++
Sbjct: 121 AGKPADLAQIVVDSWGADI--KLADSKDRSSSHGSLVCRKYAVGGARGEAAAGFPHVFKI 178

Query: 201 ALPQLQATLAQGRDAYHARIDTLFALMAQLSDTNVYHRGGAEGAALVRERSAAFLAAGGT 260
            LP L A    G     AR    FA+MA L DTN+ HR G EG    R  + +FLA GG 
Sbjct: 179 GLPALNAMRLAGGSVVAARCQAFFAIMAALEDTNLLHRAGVEGLYYARTSAISFLAEGGV 238

Query: 261 ARPGWQEDAVDCHRLFVARRLSPGGAADLLAAACLV 296
               W + A   H  FVARRLSPGG+ADLLAA   +
Sbjct: 239 FAANWLQRAKQIHHAFVARRLSPGGSADLLAATLFI 274


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 530,642
Number of extensions: 17637
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 224
Effective length of database: 914,170
Effective search space: 204774080
Effective search space used: 204774080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)