BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2717.p (310 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980390|ref|YP_001352411.1| 2-hydroxyacid dehydrogenase [Ja... 150 7e-38 gi|152982514|ref|YP_001355351.1| formate dehydrogenase [Janthino... 108 5e-25 gi|152982997|ref|YP_001354733.1| glycerate dehydrogenase [Janthi... 102 2e-23 gi|152982822|ref|YP_001355375.1| D-isomer specific 2-hydroxyacid... 95 4e-21 >gi|152980390|ref|YP_001352411.1| 2-hydroxyacid dehydrogenase [Janthinobacterium sp. Marseille] Length = 327 Score = 150 bits (380), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 98/262 (37%), Positives = 134/262 (51%), Gaps = 14/262 (5%) Query: 44 KVAVVLTNGSTGLTADEMRALPHLQLVCALGAGFENIDVAHAQAHGIEIATGAGTNEDCV 103 K AVV+T S ++AD + A P L+ +C + G+ NIDVA A A G+ + + Sbjct: 46 KDAVVVT-ASEKMSADVIAANPQLKAICNVAVGYNNIDVAAATAAGVMVTNTPDVLNETT 104 Query: 104 ADHTLGLLLAILRNIAVLDRYTREGGW---RETLPLQPQLAGKRVGIVGMGNIGKKIARR 160 AD+ LL+A R + + + R G W R L + G +GI+GMG IG+ IARR Sbjct: 105 ADYAWTLLMANARRVCESEHWLRAGNWKHWRFDSFLGADIHGATLGILGMGRIGQAIARR 164 Query: 161 AAAFDAEIAYCNRKKRDDVDYHY-----FSDVAQLAGWADCLIVAAPGGAQTLHLINARV 215 + FD + Y NR + Y + +L AD LI+ P QT H+I A Sbjct: 165 STGFDMNVIYHNRSRATPEQEAYANNARYVSKEELLRSADHLILVLPYSPQTHHIIGAAE 224 Query: 216 LEELGPKGYLVNIGRGSVVDTEALAAALSSGRLAGAGLDVYEGEPKPPASLIGLPNVVLT 275 L + P LVNI RG +VD AL AAL R+A AGLDV+E EP + L NVVLT Sbjct: 225 LALMKPTATLVNIARGGIVDDVALIAALRENRIASAGLDVFENEPALHPDFLTLSNVVLT 284 Query: 276 PHIAGWSPEAISASVRQFLRNC 297 PHI S + R+ + +C Sbjct: 285 PHIGSGSEK-----TRRAMADC 301 >gi|152982514|ref|YP_001355351.1| formate dehydrogenase [Janthinobacterium sp. Marseille] Length = 400 Score = 108 bits (269), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 11/251 (4%) Query: 56 LTADEMRALPHLQLVCALGAGFENIDVAHAQAHGIEIATGAGTNEDCVADHTLGLLLAIL 115 +TA+ + L+++ G G ++ D+ A H I +A N VA+H + ++L+ + Sbjct: 104 MTAERIAKAKKLKMIVTAGIGSDHTDLEAANKHNITVAEVTYCNSHSVAEHVVMMILSQV 163 Query: 116 RNIAVLDRYTREGGWR--ETLPLQPQLAGKRVGIVGMGNIGKKIARRAAAFDAEIAYCNR 173 RN GGW + + L VG V G IG ++ R FD ++ Y +R Sbjct: 164 RNYIPSYNQVINGGWNIADCVERSYDLEAMSVGTVAAGRIGLRVLRLLKPFDVKLHYMDR 223 Query: 174 KK-----RDDVDYHYFSDVAQLAGWADCLIVAAPGGAQTLHLINARVLEELGPKGYLVNI 228 + +++ Y S + L D + + P +T H+IN + L+ Y++N Sbjct: 224 HRLPEAVEKELNLTYHSTLDSLTKVCDVVTLNCPLHPETEHMINEKTLKNFKRGSYIINT 283 Query: 229 GRGSVVDTEALAAALSSGRLAGAGLDVYEGEPKPPAS-LIGLPNVVLTPHIAGWSPEA-- 285 RG + D +A+ AAL SG+LAG DV+ +P P +P+ +TPHI+G S A Sbjct: 284 ARGKLCDRDAIVAALKSGQLAGYAGDVWFPQPAPKDHPWRTMPHHGMTPHISGTSLTAQT 343 Query: 286 -ISASVRQFLR 295 +A R+ L Sbjct: 344 RYAAGTREILE 354 >gi|152982997|ref|YP_001354733.1| glycerate dehydrogenase [Janthinobacterium sp. Marseille] Length = 336 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 112/232 (48%), Gaps = 17/232 (7%) Query: 63 ALPHLQLVCALGAGFENIDVAHAQAHGIEIATGAGTNEDCVADHTLGLLLAILRNIAVLD 122 A P L++V A G++N DV G+ A+ T+GLLL + R++ D Sbjct: 64 ACPKLKIVFAALKGYDNFDVDACTKRGVWFGIVPDLLTVPTAELTVGLLLGLTRHVMAGD 123 Query: 123 RYTREG---GWRETLPLQPQLAGKRVGIVGMGNIGKKIARRAAAFDAEIAYCNRKKRDDV 179 + R G GWR L LAG +GI+GMG +GK IA+R + F+ YC+ + V Sbjct: 124 DHVRSGTFHGWRPKL-YGAGLAGSTIGIIGMGRVGKAIAKRLSGFEMNAVYCDSVPLNPV 182 Query: 180 DYHYFS----DVAQLAGWADCLIVAAPGGAQTLHLINARVLEELGPKGYLVNIGRGSVVD 235 D ++ +L +D ++ P + T HLI+A + ++ YL+N RGSVVD Sbjct: 183 DEQAWNARQVSFDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRRGSYLLNTSRGSVVD 242 Query: 236 TEALAAALSSGRLAGAGLDVYEGE---------PKPPASLIGLPNVVLTPHI 278 A+ AL+ G LAG DV+E E P A L + TPH+ Sbjct: 243 ENAVVEALNQGHLAGYAADVFEMEEWARPDRPLTVPQALLNNRTQTLFTPHV 294 >gi|152982822|ref|YP_001355375.1| D-isomer specific 2-hydroxyacid dehydrogenase [Janthinobacterium sp. Marseille] Length = 323 Score = 95.1 bits (235), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 114/248 (45%), Gaps = 20/248 (8%) Query: 46 AVVLTNGSTGLTADEMRALPHLQLVCALGAGFENIDVAHAQAHGIEIATGAGTNEDCVAD 105 A+VL T L+ + LP+L+L+ G +ID+ A A GI I G G + A+ Sbjct: 49 ALVLIRERTVLSRQLLEKLPNLKLIAQTGKVSGHIDLPAAAARGITIVEGVG-DPTAPAE 107 Query: 106 HTLGLLLAILRNIAVLDRYTREGGW--------RETLPLQPQLAGKRVGIVGMGNIGKKI 157 T L++A +R + ++G W R TL L G+ + I G G IG+ I Sbjct: 108 LTWTLIMAAMRKLPQYVNNLKDGLWQIASMSPARNTL--GTALKGRTLAIWGYGRIGQMI 165 Query: 158 ARRAAAFDAEI------AYCNRKKRDDVDYHYFSDVAQLAGWADCLIVAAPGGAQTLHLI 211 A AF ++ A C RD Y S AD L + T ++ Sbjct: 166 AAYGKAFGMDVMVWGRPASCEAAVRDG--YRAASSQQAFFSEADVLTLHLRLNDATRGIV 223 Query: 212 NARVLEELGPKGYLVNIGRGSVVDTEALAAALSSGRLAGAGLDVYEGEPKPPAS-LIGLP 270 A L + P+ VN R +V T+AL AAL GR A LDV+E EP PP S L+ + Sbjct: 224 TADDLARMKPQALFVNTSRAELVATDALQAALEQGRPGYAALDVFENEPLPPGSPLLRME 283 Query: 271 NVVLTPHI 278 NV+ +PH+ Sbjct: 284 NVLASPHL 291 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 718,029 Number of extensions: 28957 Number of successful extensions: 145 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 137 Number of HSP's successfully gapped: 4 Length of query: 310 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 227 Effective length of database: 914,170 Effective search space: 207516590 Effective search space used: 207516590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)