BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2716.p
         (164 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980455|ref|YP_001351966.1| acyl-CoA thioester hydrolase [J...    78   4e-16

>gi|152980455|ref|YP_001351966.1| acyl-CoA thioester hydrolase
           [Janthinobacterium sp. Marseille]
          Length = 138

 Score = 77.8 bits (190), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 2/125 (1%)

Query: 2   DLPSHQL-TMTVLMTPDMANFAGNVHGGTILKLLDQVAYACGSRYAGQYVVTLSVDQVMF 60
           DLP+ ++  M V+  P  AN  G+V GG I+  +D     C +R A   VVT++V+  +F
Sbjct: 8   DLPAGKIPQMRVVPMPHDANMHGDVFGGWIMAQVDLAGAVCATRRANGRVVTIAVNSFLF 67

Query: 61  RQPIHVGELVTFLASVNHTGKSSMEIGIKVVAENIRTQ-ETRHVNSCFFTMVAVDDQRKP 119
           + P+ VG+L++  A +   G +S+ + ++  AE  R + E   V     T VA +D RKP
Sbjct: 68  KHPVFVGDLLSIYAEIVKVGNTSVTVNVECYAERNRLEVEIVKVTEATLTYVATNDDRKP 127

Query: 120 IPVPP 124
             +PP
Sbjct: 128 RQLPP 132


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 344,984
Number of extensions: 12006
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 88
Effective length of database: 940,049
Effective search space: 82724312
Effective search space used: 82724312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)