BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2715.p
         (151 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981986|ref|YP_001354945.1| hypothetical protein mma_3255 [...   171   1e-44

>gi|152981986|ref|YP_001354945.1| hypothetical protein mma_3255
           [Janthinobacterium sp. Marseille]
          Length = 148

 Score =  171 bits (434), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/151 (60%), Positives = 110/151 (72%), Gaps = 7/151 (4%)

Query: 1   MLFAKFIHVLGLTVWVGGMFFAHMALRPALA-VLHPEQRLSLMAAVLGNFFIWVWVAIAL 59
           M+ AKF+H+LG TVWVGGMFFAH ALRP  A VL P QRL+L+A V   FF WVW+++AL
Sbjct: 1   MIIAKFLHILGFTVWVGGMFFAHNALRPTAATVLEPPQRLTLLAGVFTKFFTWVWISVAL 60

Query: 60  VLGSGLHMMGVMSAGAAMLPP-YVHAMTGIGVVMMLIFAHIFFAPFRRLKLASAQQDWDR 118
           +LGSG++MM +M       PP YV  M  +G++MMLIFAHIFFAPFRRL  A A QDW  
Sbjct: 61  ILGSGMYMMALMGK-----PPLYVTLMFVLGIIMMLIFAHIFFAPFRRLLRAVAAQDWKA 115

Query: 119 ASRALRQVRLLVGINLGLGLLTIAIGALGPL 149
              A+  +R LVGINL LGL+TI IG LGPL
Sbjct: 116 GGAAMATIRKLVGINLILGLVTIVIGTLGPL 146


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.334    0.144    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 298,245
Number of extensions: 11256
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 76
Effective length of database: 943,746
Effective search space: 71724696
Effective search space used: 71724696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 125 (52.8 bits)