BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2714.p
         (289 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981497|ref|YP_001354822.1| hypothetical protein mma_3132 [...   246   2e-66

>gi|152981497|ref|YP_001354822.1| hypothetical protein mma_3132
           [Janthinobacterium sp. Marseille]
          Length = 283

 Score =  246 bits (627), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/280 (46%), Positives = 167/280 (59%), Gaps = 15/280 (5%)

Query: 9   LSAIYFYPIKSCGGLSLARAEIGPLGLA----LDRHWMVVDRQGQFLSQRSHPRMACITP 64
           L+ +  YPIKSC G+SL  A +   GL      DR WM+VD  G  L+QR +P+MA I P
Sbjct: 4   LTELNLYPIKSCAGISLREATLTAAGLMSEQIYDREWMIVDENGDALTQREYPKMALIAP 63

Query: 65  AFEEDALVLRAPGMEALRLA---AAGQDGATLAVQVWNSPLEALDQGEQARIWLSDYLHD 121
             + D L LRAPGM  L +     A +D   + VQVW+  ++A D  +   +W S+ L  
Sbjct: 64  RIKADTLELRAPGMLRLEVPLGLPAPEDEKLIRVQVWDDQVDAYDCDDTTALWFSNALGV 123

Query: 122 AVRLVRFNPAIMRACSTRWTGDYRASTQFSDGYPLLVIGQSSLDDLNARLAAKGAPAQGM 181
             RLVRF+P   R  S +WT D      FSDG+P+LVIG  SLDDLN +L A+G     M
Sbjct: 124 KCRLVRFHPDAKRYSSKKWTADAEVPVLFSDGFPMLVIGTGSLDDLNEKLVAQGRSPIPM 183

Query: 182 ERFRPNLVISGLEAYEEDYIDTVRIGAGGRAVQLKLVKPCARCPIPGIDQRTGLRDAQWP 241
            RFRPNLV S +  +EED  D  +         LK VKPC RCP+P +DQ TG    ++ 
Sbjct: 184 NRFRPNLVFSDIAPFEEDLADVYQFEGAA----LKPVKPCPRCPLPSVDQATG----EFG 235

Query: 242 DEPLATLSTYRANPRVDGGLTFGQNAIVIGGEGGVIEVGQ 281
            +PL  LSTYRANP+VDG +TFG +A+V+ GEG V+ VGQ
Sbjct: 236 PDPLDILSTYRANPKVDGSITFGMDAVVLNGEGTVLRVGQ 275


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 676,303
Number of extensions: 27472
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 207
Effective length of database: 917,867
Effective search space: 189998469
Effective search space used: 189998469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)