BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2699.p
         (525 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981944|ref|YP_001354148.1| hypothetical protein mma_2458 [...    59   1e-09

>gi|152981944|ref|YP_001354148.1| hypothetical protein mma_2458
           [Janthinobacterium sp. Marseille]
          Length = 123

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%)

Query: 5   RKSAVVIAGHGSRDPDSLRQFEALVELVRERAGERIVRHGYLEFAAPTIAQAAVACIEEG 64
            K A+++  HG+RDP     F+ L  LV+ ++ E +V   +LE   P + +      + G
Sbjct: 2   NKRALILFAHGARDPRWAEPFQRLQALVKAQSPELVVELAFLELMTPRLPELMAELAQAG 61

Query: 65  ASEVAVVPGVLLGARHAKNDLPAELLALARDYPQIDF 101
            +EV VVP  L    H + DLP+ +  L   YP + F
Sbjct: 62  VTEVTVVPVFLGQGGHVRADLPSIVDELKLQYPAVSF 98


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,211,890
Number of extensions: 50585
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 437
Effective length of database: 895,685
Effective search space: 391414345
Effective search space used: 391414345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)