BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2693.p
         (384 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980970|ref|YP_001354895.1| G3E family GTPase [Janthinobact...    89   5e-19

>gi|152980970|ref|YP_001354895.1| G3E family GTPase
           [Janthinobacterium sp. Marseille]
          Length = 351

 Score = 89.0 bits (219), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 9/133 (6%)

Query: 23  IPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGELLRAEGDAQGQVQIQ 82
           IP T++TGFLGAGKTTLL  ++Q     ++A++ NEFG+  ID E+L  +G      QI 
Sbjct: 4   IPTTILTGFLGAGKTTLLNRILQEPHGFKIAVIENEFGQENIDNEILVQDGTE----QIV 59

Query: 83  DFAHGLIAYGDDEHFVPAMLALAARRA----QIDHVLIETSGLALPSAVMEV-LQSPELA 137
           +  +G I        + A+ +LA +R     Q DHV+IET+GLA P  V +      E+A
Sbjct: 60  EMNNGCICCTVRGDLIIALTSLAQKRNAGELQFDHVVIETTGLANPGPVAQTFFVDEEVA 119

Query: 138 PHFVLDATLAVVD 150
             +++DA + VVD
Sbjct: 120 SEYLVDAIITVVD 132


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 717,517
Number of extensions: 25283
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 299
Effective length of database: 906,776
Effective search space: 271126024
Effective search space used: 271126024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)