BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2692.p
         (200 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980675|ref|YP_001352785.1| cob(I)alamin adenosyltransferas...   202   1e-53

>gi|152980675|ref|YP_001352785.1| cob(I)alamin adenosyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 209

 Score =  202 bits (513), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 98/196 (50%), Positives = 135/196 (68%), Gaps = 2/196 (1%)

Query: 6   QSHKRMTQRHKEGFEKKKAAAQLEKGLLIVNTGTGKGKSSAAFGMGMRILGHGMKLGVVQ 65
           + H     R KE  ++K  AA+   G+L++  G GKGKSS+AFGM  R LGHGMK+GVVQ
Sbjct: 15  ERHNARMARKKEVVDRKIEAAKRNAGVLVITCGNGKGKSSSAFGMAARALGHGMKVGVVQ 74

Query: 66  FIKGALYSAERDFLGSHAN-CDFHVVGEGYTWDTQDRAADMRTAARGWAEAVRMIGDPSY 124
           FIKGA+ + E +F     +   FHV+GEGYTW+TQ+R  D+  A + W  A  ++ DP+ 
Sbjct: 75  FIKGAIATGEENFFRRFPDEISFHVMGEGYTWETQNRERDVANAEKAWQRAQVLLSDPAI 134

Query: 125 DMVILDELNIVLKYQYLELEEVLRTFAARREMLHIVVTGRHAPEALIEQADLVSEMRPLK 184
            +V+LDELNI LKY+YL++++V+    AR EM H+VVTGR AP  LIE AD V+EM+P+K
Sbjct: 135 GLVVLDELNIALKYKYLDVQQVIADLQARPEMQHVVVTGRGAPPELIEVADTVTEMQPVK 194

Query: 185 HPYKEQGVKAQKGVEF 200
           H +   G+ AQ+GVE+
Sbjct: 195 HAFA-NGIAAQQGVEW 209


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 466,621
Number of extensions: 18595
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 121
Effective length of database: 928,958
Effective search space: 112403918
Effective search space used: 112403918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)