BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2691.p
         (444 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979999|ref|YP_001352786.1| cobyrinic acid a,c-diamide synt...   389   e-109

>gi|152979999|ref|YP_001352786.1| cobyrinic acid a,c-diamide
           synthase [Janthinobacterium sp. Marseille]
          Length = 431

 Score =  389 bits (999), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/431 (49%), Positives = 283/431 (65%), Gaps = 13/431 (3%)

Query: 11  LFISAPASGHGKTTITAALARLYRQQGKRVRVFKTGPDFLDPMVLEQASGQPVVNLDLWL 70
           + IS  ASG GKTT+TAALAR   +QG RVRVFKTGPD+LDPM+L++ASG  V  LDLW+
Sbjct: 7   VLISGIASGQGKTTVTAALARKLIRQGLRVRVFKTGPDYLDPMILQRASGAEVYALDLWM 66

Query: 71  AGEDHCRRQVALAAAESEVLLVEGVMGLYDGEPSSADLAQLLGIPVVAVINARGMGQTIG 130
            G D CRR +A AA E +V+L+EGVMGLYDG+PSSADLA+  G+PVV V++A  M QT+G
Sbjct: 67  VGLDDCRRLLAKAAREVDVILIEGVMGLYDGDPSSADLARAFGVPVVVVLDAAKMAQTVG 126

Query: 131 ALAQGLLAYRPELKFAGVLANGVASPRHAQMLRQGLRNARPAMPLLTGLQRDMQFALPER 190
           A+  GL  Y P +  AGV+ N +AS  HA+M+ QG+RN    +P+L  L +  Q ALPER
Sbjct: 127 AVVLGLQQYGP-VDLAGVIVNRIASASHAKMVTQGIRN----VPILATLSKQAQ-ALPER 180

Query: 191 HLGLVAAPEVADLEARLDAVAERMSATSLA-ELPAPVDFGAPPAERVFPRLLEGKTIAVA 249
           HLGLV   E+A ++  LD +A+++     A E  APV      A    P+LL GKTIA+A
Sbjct: 181 HLGLVQPDEIAQVDQVLDQMADQIEIDMAAWEAIAPVSLDESLAAATMPQLLAGKTIAIA 240

Query: 250 RDVAFSFIYTSNLELLQLMGARLVFFSPLADAPLP-ECDAVWLPGGYPELHLATLQAAQV 308
           RD AF+F+Y +NLE L+  GA+L FFSPL D  +P + +AV++PGGYPELH ATL  AQ 
Sbjct: 241 RDAAFAFVYHANLECLRAAGAKLAFFSPLNDEAIPADANAVYIPGGYPELHCATLAGAQN 300

Query: 309 TQSSLRAHVAAGKALYAECGGMLFLLDTIIGMDGASGQMCGVLPGQASVQPRLQGLGYQT 368
            Q S+RA  A    + AECGGM+ + D +    G    M G++PG+  +Q +L GLG Q+
Sbjct: 301 WQESMRAAHARNIPILAECGGMMVIADHLTDAQGRQWPMVGLMPGEVVMQGKLAGLGMQS 360

Query: 369 LQLNLPGAVGEHLRCHTFHYSRAVVGAQFMARGERLFDSSEGEVVYRRGQVTASYLHAYF 428
           L        GE LR H FHYS      +  A+  +  + ++GE VY++G +TA+Y HAYF
Sbjct: 361 LATE----DGE-LRGHAFHYSTLSTPVEPQAQTVKRSNGAQGEAVYKQGALTATYFHAYF 415

Query: 429 RSAPRTVAALF 439
            S P   A +F
Sbjct: 416 SSCPAATARIF 426


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,067,740
Number of extensions: 45966
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 358
Effective length of database: 903,079
Effective search space: 323302282
Effective search space used: 323302282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)