BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2688.p
         (315 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980055|ref|YP_001352788.1| cobalamin biosynthesis protein ...   383   e-108
gi|152980221|ref|YP_001352286.1| CobD/CbiB family protein [Janth...   105   3e-24

>gi|152980055|ref|YP_001352788.1| cobalamin biosynthesis protein
           CobD [Janthinobacterium sp. Marseille]
          Length = 313

 Score =  383 bits (984), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/312 (66%), Positives = 236/312 (75%), Gaps = 5/312 (1%)

Query: 1   MLSGLSWPWLAVLMALGMALDLLLGEARRWHPLVGFGHLAQRIEALLNARPGLRLRGVLA 60
           ML GLS   +A+LM LG+ LD+ LGEA RWHPLVGFG+LA RIE   N       RG LA
Sbjct: 1   MLFGLSCGAIAILMLLGVLLDMRLGEATRWHPLVGFGNLAIRIEKKFNTGGSRIARGALA 60

Query: 61  WSLAVLPAVLLTIWLLSWLPWWLSAL----LHATLLYFCIGLRSLREHTLPIAQALATGE 116
           W L V P V +  WLL++      AL    +HA LLYF +GLRSLR+HTLPIA AL  G+
Sbjct: 61  WILVVAPFVAVA-WLLTFWVAQFDALFALGVHALLLYFSLGLRSLRDHTLPIAHALMDGD 119

Query: 117 LEQARRLTSYIVSRDTRQSNEQELAKAGVESLLENGNDAVFGTLFWFLVAGGPGALLFRL 176
           L QAR LT+ IVSRDT Q+ E +LAKAGVESLLENGNDAVFGTLFWF VAGGPG +LFRL
Sbjct: 120 LAQARLLTARIVSRDTTQAQEADLAKAGVESLLENGNDAVFGTLFWFAVAGGPGVVLFRL 179

Query: 177 ANTLDAMWGYRTERFLQFGWAAARIDDVLNWIPARLTALSYAWLGQRQLAMRCWQQQAPA 236
           ANTLDAMWGYRT+RF +FG  AARIDDVLN+IPARLTALSYA LG  + A RCW+ QAPA
Sbjct: 180 ANTLDAMWGYRTQRFNEFGRVAARIDDVLNFIPARLTALSYAVLGNTRQAWRCWRAQAPA 239

Query: 237 WSSPNAGPVMAAGAGALGLALGGPAIYDGELEQRPPLGLGQPPQGPDIVRAWRLVAMSAA 296
           WSSPNAGPVM+AGAGALG++LGG AIYDGELEQRPPLG G    G DI RAWRLV ++  
Sbjct: 240 WSSPNAGPVMSAGAGALGISLGGAAIYDGELEQRPPLGSGPLAAGKDIARAWRLVRLTTV 299

Query: 297 LWLAVVGAVAVL 308
           LWL ++    V 
Sbjct: 300 LWLLLICIAGVF 311


>gi|152980221|ref|YP_001352286.1| CobD/CbiB family protein
           [Janthinobacterium sp. Marseille]
          Length = 318

 Score =  105 bits (262), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 39  LAQRIEALLNARPGLRLRGVLAWSLAVLPAVLLTIWLLSWLPWWLSAL----LHATLLYF 94
           LA ++E   NA  G    G LAW+L ++ A  + + LL W+   L  L    ++  ++Y 
Sbjct: 31  LAAKLEGSFNA--GQAHHGRLAWAL-MIAAFCIPVALLYWISVKLGPLAALIVNVGVVYL 87

Query: 95  CIGLRSLREHTLPIAQALATGELEQARRLTSYIVSRDTRQSNEQELAKAGVESLLENGND 154
            +G R    +   I  AL  G+   AR L +    RDT   +  E+A+  VE+ L   + 
Sbjct: 88  TLGFRHYSHYFTSIQLALNNGDEATARSLLAEWTKRDTAGMDVSEVARIAVETALVTTHR 147

Query: 155 AVFGTLFWFLVAGGP-GALLFRLANTLDAMWGY-RTERFLQFGWAAARIDDVLNWIPARL 212
            VFG  FW L   GP GA+++R+A  L  +W   +     +FG  A++    ++WIPARL
Sbjct: 148 NVFGVFFWILTPLGPVGAVMYRVAEYLARVWNEPKMAEREEFGRFASQAFYWIDWIPARL 207

Query: 213 TALSYAWLGQRQLAMRCWQQQAPAWSSPNAGPVMAAGAGALGLALGGP 260
           TA ++A +G  + A+  W+  A  W     G +++AG GA+G+ LG P
Sbjct: 208 TAAAFAVVGNFEDAIYAWRNFAGRWQDEAIGIILSAGGGAMGIRLGAP 255


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.138    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 587,426
Number of extensions: 20819
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 232
Effective length of database: 914,170
Effective search space: 212087440
Effective search space used: 212087440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)