BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2687.p
         (336 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981374|ref|YP_001352789.1| cobalamin biosynthetic protein ...   385   e-108
gi|152980149|ref|YP_001354362.1| histidinol-phosphate aminotrans...    56   3e-09

>gi|152981374|ref|YP_001352789.1| cobalamin biosynthetic protein
           CobC [Janthinobacterium sp. Marseille]
          Length = 325

 Score =  385 bits (990), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/329 (61%), Positives = 241/329 (73%), Gaps = 10/329 (3%)

Query: 1   MLEHGGNLDDAARHYGRARSQWLDLSTGINPRPYPAPAPSAEAWHRLPETSHALQHAACD 60
           MLEHGGNL DA + YGR R++WLDLSTGINP+ YP P  +A+AWHRLPE S AL  AA  
Sbjct: 1   MLEHGGNLHDAIQRYGRPRAEWLDLSTGINPQAYPVPPLTADAWHRLPEPSTALLEAAQA 60

Query: 61  YYLAPHMLAVAGTQAAIQALPQVRLRQDGRPAQVVVAAPIYAEHAHCWRRAGHQVREVSY 120
           YY AP +L VAGTQAAIQALP  RLR   R   VV+AAP YAEH++ WR+AGH+V EV+Y
Sbjct: 61  YYGAPQLLPVAGTQAAIQALP--RLRAHSR---VVIAAPSYAEHSYQWRQAGHEVHEVAY 115

Query: 121 ADLEDAVSTPGCEVLVLCNPNNPTGALVAPEHLLRWAALLAERGGWLVVDEAFGDTLQGY 180
             L  A     C+VL +CNPNNPTG  ++P+ LL W+A LA RGGWL+VDEAFGDT+   
Sbjct: 116 DRL--AAEIDHCDVLSICNPNNPTGEKISPQLLLEWSARLAARGGWLLVDEAFGDTMPEQ 173

Query: 181 SVAPYSEQPGLIVLRSVGKFFGLAGLRLGFVGAAPALLAALADWLGPWTITGPAQQIGST 240
           SVA Y+ Q GLIV RSVGKFFGLAGLRLGFV A   LL  LAD LGPWT++GPAQQIG+ 
Sbjct: 174 SVAAYTAQKGLIVFRSVGKFFGLAGLRLGFVAAHANLLQELADLLGPWTVSGPAQQIGAA 233

Query: 241 ALRDFAWQQQTRQRLLSEGERLHELLAQQGIAASGTALFQWWPEPRAAAFHDAMARAGIW 300
           AL D  WQQQ R++L    +RL ++L   GI ++GT LFQ+WP   A  F   MA+ GIW
Sbjct: 234 ALADTVWQQQMRRQLQDSAKRLQQMLQTHGIQSNGTELFQYWPSSNAVGFAAHMAQHGIW 293

Query: 301 VRLFRQGAGGIRLGLPPDEAGWSRLQEAL 329
           +R+F     G+RLGLPPD+AGW RLQ+AL
Sbjct: 294 IRIFSH---GVRLGLPPDDAGWLRLQQAL 319


>gi|152980149|ref|YP_001354362.1| histidinol-phosphate
           aminotransferase [Janthinobacterium sp. Marseille]
          Length = 368

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 6/135 (4%)

Query: 123 LEDAVSTPGCEVLVLCNPNNPTGALVAPEHLLRWAALLAERGGWLVVDEAFGDTL----Q 178
           + DA+      ++ + NPNNPTG  +  E +  +   +      +V+DEA+ + L    Q
Sbjct: 149 MADAIEA-DTRLIFVANPNNPTGTFIPGEQIESFLKRVPPEV-VVVLDEAYTEFLAPEQQ 206

Query: 179 GYSVAPYSEQPGLIVLRSVGKFFGLAGLRLGFVGAAPALLAALADWLGPWTITGPAQQIG 238
             S+A  ++ P L+V RS+ K +GLAGLR+G+  A   +   L     P+ +   AQ   
Sbjct: 207 YDSIAWVAKYPNLLVSRSMSKVYGLAGLRIGYGIAQAGITDLLNRIRQPFNVNSLAQAAA 266

Query: 239 STALRDFAWQQQTRQ 253
             AL D A+ Q++ Q
Sbjct: 267 IAALNDHAFVQKSAQ 281


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 868,082
Number of extensions: 35763
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 252
Effective length of database: 910,473
Effective search space: 229439196
Effective search space used: 229439196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)