BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2686.p
         (489 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980577|ref|YP_001352791.1| cobyric acid synthase [Janthino...   686   0.0  

>gi|152980577|ref|YP_001352791.1| cobyric acid synthase
           [Janthinobacterium sp. Marseille]
          Length = 476

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/457 (75%), Positives = 387/457 (84%), Gaps = 2/457 (0%)

Query: 10  MIQGTTSDAGKSTLAAALCRLLKNDGIAVAPFKPQNMALNSAVTSDGGEIGRAQALQAQA 69
           M+QGTTSDAGK+TL AALCRLL  +G+ V PFKPQNMALNSAVT+DGGEIGRAQALQA A
Sbjct: 1   MVQGTTSDAGKTTLVAALCRLLAQEGVRVVPFKPQNMALNSAVTADGGEIGRAQALQAVA 60

Query: 70  AGIAPHTDMNPVLLKPSSDTGAQVIVHGKVRADMNARDYHRYKTEAMQAVLQSYARLRAQ 129
           AG+ PHTDMNP+LLKPSSDTGAQVI+HGK R+DMNARDYH YK  AMQAVL+SY RL+ Q
Sbjct: 61  AGLQPHTDMNPILLKPSSDTGAQVIIHGKARSDMNARDYHAYKPIAMQAVLESYQRLQTQ 120

Query: 130 YACVIVEGAGSPAEINLRARDIANMGFAEAVDCPVIIVADIDRGGVFAHLTGTLDCLSES 189
           Y  V+VEGAGSPAE+NLR RDIANMGFAEAVDCPVI+VADIDRGGVFAH+ GTL CLSES
Sbjct: 121 YESVLVEGAGSPAEVNLRERDIANMGFAEAVDCPVILVADIDRGGVFAHIIGTLACLSES 180

Query: 190 ERERVIGFVINRFRGDISLLQPGLDWLEQRTGKPVLAVLPYLHGLHLDAEDAVAVTQEVK 249
           ER R +GFVINRFRGDISLL+PGL WLE++TGKPVLAVLPYLHGL LDAEDAV  TQ V+
Sbjct: 181 ERRRTVGFVINRFRGDISLLEPGLKWLEEQTGKPVLAVLPYLHGLFLDAEDAVEHTQAVR 240

Query: 250 GDFRIVVPVFPRISNHTDFDALRAHPGVDLRFIGPGQPVPPADLIILPGSKNTRGDLSWL 309
           G FR+VVPV PRISNHTDFDALRAHP +DL+ +GPGQP+P ADLIILPGSKNTRGDL WL
Sbjct: 241 GAFRVVVPVPPRISNHTDFDALRAHPEIDLQLVGPGQPIPAADLIILPGSKNTRGDLEWL 300

Query: 310 REHGWDAAIDRHLRYGGKLIGICGGFQMLGESVDDPHGVEGVPGSSPGLGLLSMRTALTR 369
             +GW  A+ RHLRYGGK+IGICGG+QMLG +V DPHGVEG PG S GLGLL + T LTR
Sbjct: 301 IANGWREALLRHLRYGGKIIGICGGYQMLGMTVADPHGVEGTPGESAGLGLLDVATELTR 360

Query: 370 EKRLLQVSGHCAFGDTAAPVRGYEIHMGVSSGAALQRPAFVIEGRGEGGQSADGQILGSY 429
           +KRL QVSG CAF D    V GYEIHMG S GAA  +PAF+I+GR EG +SAD Q+LG+Y
Sbjct: 361 DKRLEQVSGVCAFADVG--VSGYEIHMGTSDGAARAQPAFLIDGRPEGARSADDQVLGTY 418

Query: 430 LHGMFDTPQAVAALLAWAGLAGVEAVDLDTLREASLE 466
           LHG+FDTP A AALL WAGL     VD   LREASL+
Sbjct: 419 LHGLFDTPDACAALLHWAGLNSDVRVDTAQLREASLQ 455


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,152,447
Number of extensions: 48574
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 402
Effective length of database: 899,382
Effective search space: 361551564
Effective search space used: 361551564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)