BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2684.p
         (406 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [...   291   4e-80
gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthi...   169   3e-43
gi|152980288|ref|YP_001353254.1| multidrug efflux system transme...   141   6e-35
gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprote...   127   1e-30
gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthi...   104   7e-24

>gi|152981697|ref|YP_001353374.1| HlyD family secretion protein
           [Janthinobacterium sp. Marseille]
          Length = 457

 Score =  291 bits (746), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 169/405 (41%), Positives = 252/405 (62%), Gaps = 25/405 (6%)

Query: 1   MTAQS--SVPPVRRPLR------WLLVLVVLLLLIAVG----WFLSHKMGRRP------- 41
           MTA S  S PP  RP R         ++ VL++LIA G    W+ S     +        
Sbjct: 1   MTANSEASNPPPSRPNRSRTGKTRRTLIWVLIILIAAGLGFWWWKSPSSANKAAQGNGGG 60

Query: 42  ---FPNMDMPTPVQAGAATTGDVPVTLTALGTVTANASVTVTSRIDGHLQAVYFTEGQYV 98
               PNM  P  VQ   A   D+ VT+ A+G++ A  +  V  ++ G LQ + F EGQ V
Sbjct: 61  RFGGPNMVQPVSVQE--ARRQDIRVTVNAIGSINAANTAVVRVQVSGVLQQINFKEGQQV 118

Query: 99  QKGQLLAQLDTRAYQAEVVQYQGTLAQSQAQLVSARQTLDRYERLFAKDSLARQDLDTQR 158
           Q GQLLAQ+D RA+QA + Q +G LA+ +AQL +AR  L RY+ L +KD++ +Q LDTQ 
Sbjct: 119 QAGQLLAQIDPRAFQATLGQAEGVLARDKAQLDNARIDLARYKDLLSKDAIPKQQLDTQE 178

Query: 159 STVLQYQGAVQAAQGQIQAAQLNIQYGRITAPVSGYVGLRLVDPGNVVHASDTTGIVTIT 218
           + V Q +G V++ QG + +A+L + Y R+TAP++G VGL+  D GNVV  +DT G+V IT
Sbjct: 179 ALVRQLEGTVKSDQGTVDSAKLQLSYTRVTAPIAGRVGLKQSDLGNVVQPADTNGVVIIT 238

Query: 219 QTHPIAVKFSIPQASLKSVLGPLRQGQTLPVQALEQQGTQSIASGKLMFVSNEVDTTTGS 278
           QT PIA+ FS+P A++ ++   LR  +T+ V+A ++ G   +A+G++  V N +D TT +
Sbjct: 239 QTRPIALVFSVPSANVPAITARLRANETVAVEAWDRTGKTKLATGQVATVDNAIDVTTDT 298

Query: 279 VQLKALFDNNDDALYPNQFVNVRLQVDTLKQAILVPASSVQQSDSGKYVFVVNADNTVRR 338
           +++KALF N DDAL+PNQ V+V +Q++ LK  + VP ++V +   G YV+VVNAD+TV  
Sbjct: 299 IKVKALFPNLDDALFPNQAVSVVMQLNLLKDVLTVPQAAVLRGSQGFYVYVVNADSTVST 358

Query: 339 QVVSTGPVTDDGRIVISSGVKAGDQVVTQGIDSLTNGSKVKLVKA 383
           +VV  G + D G + I + ++AG++VV  G D L  G KV+++ A
Sbjct: 359 RVVKPGAI-DSGWMAIEAKLEAGEKVVIDGTDRLREGGKVEVIAA 402


>gi|152981804|ref|YP_001354023.1| membrane fusion protein
           [Janthinobacterium sp. Marseille]
          Length = 377

 Score =  169 bits (428), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/327 (34%), Positives = 188/327 (57%), Gaps = 6/327 (1%)

Query: 56  ATTGDVPVTLTALGTVTANASVTVTSRIDGHLQAVYFTEGQYVQKGQLLAQLDTRAYQAE 115
           AT   +P+T+ A G VTA ++V V  ++   ++ ++  EGQ+V+ GQLL  LD R+ Q+ 
Sbjct: 46  ATQKTIPITVNANGYVTAVSTVDVRPKVQNIVRTIHVKEGQFVKAGQLLFTLDERSDQSN 105

Query: 116 VVQYQGTLAQSQAQLVSARQTLDRYERLFAKDSLARQDLDTQRSTVLQYQGAVQAAQGQI 175
           V +    LA +QA+L  A Q L R + L AK+ +++  +DT R+ V   +   +A Q  I
Sbjct: 106 VAKASAELAAAQAELADAEQILKRNQDLLAKNFVSQAVVDTARNKVDALRNTTRANQAAI 165

Query: 176 QAAQLNIQYGRITAPVSGYVGLRLVDPGNVVHASDTTGIVTITQTHPIAVKFSIPQASLK 235
           Q++ + +   +I A +SG +G+  V PG++   + T  +VTI Q  PI + F++P+  L 
Sbjct: 166 QSSSVALSDNQIKAGISGRIGVINVHPGSLAQPTGTV-MVTIVQIDPIMISFTLPERELA 224

Query: 236 SVLGPLRQGQTLPVQALEQQGTQSIASGKLMFVSNEVDTTTGSVQLKALFDNNDDALYPN 295
           ++     QG   PV A  Q   Q + +GKL F+ N  DT +G++++KA F N +  L+P 
Sbjct: 225 NIRATYPQGNA-PVHA--QLPGQEVLTGKLTFIDNLADTQSGTIRMKAEFANAEQKLWPG 281

Query: 296 QFVNVRLQVDTLKQAILVPASSVQQSDSGKYVFVVNADNTVRRQVVSTGPVTDDGRIVIS 355
            ++NV +    +  A+LVPA +V      K V+VV  D+TV+ + +S   +  +G     
Sbjct: 282 SYINVSMVSREVPDAVLVPAQAVVTGPVDKLVYVVQPDDTVKEEKISVLAI--EGGQAAV 339

Query: 356 SGVKAGDQVVTQGIDSLTNGSKVKLVK 382
           SGVKAG +VV +G  +L  G+K++ VK
Sbjct: 340 SGVKAGSRVVVEGTKNLRPGTKIREVK 366


>gi|152980288|ref|YP_001353254.1| multidrug efflux system
           transmembrane protein [Janthinobacterium sp. Marseille]
          Length = 408

 Score =  141 bits (356), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 163/306 (53%), Gaps = 6/306 (1%)

Query: 69  GTVTANASVTVTSRIDGHLQAVYFTEGQYVQKGQLLAQLDTRAYQAEVVQYQGTLAQSQA 128
           G V A   V +  RI G + AV+F +GQ V+KG LL  +D R Y+AE+ + +   A +QA
Sbjct: 66  GRVEAVERVEIRPRISGTIDAVHFQDGQLVKKGALLFTIDPRPYKAELARAEAARAGAQA 125

Query: 129 QLVSARQTLDRYERLFAKDSLARQDLDTQRSTVLQYQGAVQAAQGQIQAAQLNIQYGRIT 188
           +L  A+  L+R +RL  + ++A+++LDT+ + + +    ++A    +  A+LN+QY  IT
Sbjct: 126 RLALAKTELERTKRLLEERAVAQRELDTRENAMQEADANLKATDAAVLTARLNLQYTEIT 185

Query: 189 APVSGYVGLRLVDPGNVVHASDTT-GIVTITQTHPIAVKFSIPQASLKSVLGPLRQGQT- 246
           APVSG V    +  GN+V    T   + T+    P+ V F I + +     G    G + 
Sbjct: 186 APVSGRVSRAEITVGNLVATGPTAPTLTTVVSVSPVYVNFEIDEPTYIRYAGNGTVGNSG 245

Query: 247 ---LPVQALEQQGTQSIASGKLMFVSNEVDTTTGSVQLKALFDNNDDALYPNQFVNVRLQ 303
              +PV            +G +    N +DT +G+++++A+F+N D  L P  +  VR  
Sbjct: 246 VSKIPVSIGLTSEEGYPRTGNVKSFDNRLDTGSGTIRVRAVFNNEDGTLTPGMYARVRTG 305

Query: 304 VDTLKQAILVPASSVQQSDSGKYVFVVNADNTVRRQVVSTGPVTDDGRIVISSGVKAGDQ 363
               K A+L+   +V      KYV VV+ADN V  + VS GP+ D  RIV  SG++  ++
Sbjct: 306 DANAKNALLIDDKAVGTDQDKKYVMVVSADNKVTYRPVSLGPIVDGLRIV-RSGLQKDER 364

Query: 364 VVTQGI 369
           +V  G+
Sbjct: 365 IVVNGL 370


>gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprotein
           A precursor [Janthinobacterium sp. Marseille]
          Length = 422

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 153/311 (49%), Gaps = 8/311 (2%)

Query: 79  VTSRIDGHLQAVYFTEGQYVQKGQLLAQLDTRAYQAEVVQYQGTLAQSQAQLVSARQTLD 138
           V +R+ G +    F EG  V+ G LL Q+D    QA        +A+ +A L +A Q   
Sbjct: 66  VRARVPGIVLKRVFREGSDVKAGTLLYQIDPAQLQATYNSADAAVARGEATLATAEQKAK 125

Query: 139 RYERLFAKDSLARQDLDTQRSTVLQYQGAVQAAQGQIQAAQLNIQYGRITAPVSGYVGLR 198
           RY+ L   +++++Q+ D   +   Q    + +A+   + A+L++ Y  +T+P+SG +G  
Sbjct: 126 RYKPLVETNAVSKQEYDDVAAAEKQAIADLASAKAARENARLSLGYASVTSPISGRIGRA 185

Query: 199 LVDPGNVVHASDTTGIVTITQTHPIAVKFSIPQASLKSVLGPLRQGQ-------TLPVQA 251
           LV  G +V   D T +  + Q  PI V  +     +  +   + +G+          V  
Sbjct: 186 LVTEGALVGQGDVTPLAIVQQIDPIYVNMTQSANEVLKLKRAMDEGKLKSAGKGAAKVTL 245

Query: 252 LEQQGTQSIASGKLMFVSNEVDTTTGSVQLKALFDNNDDALYPNQFVNVRLQVDTLKQAI 311
           +   G +   +GKL+F    VD ++GSV L+A   N D  L P  +V  R++    + AI
Sbjct: 246 VTDDGQEYGRAGKLLFSDLTVDESSGSVTLRAEIPNPDGLLLPGMYVRARIEQAVDENAI 305

Query: 312 LVPASSVQQSDSGKYVFVVNADNTVRRQVVSTGPVTDDGRIVISSGVKAGDQVVTQGIDS 371
            VP  +V ++  G  V VV AD  V  + V TG  +    I I+ G+K GDQV+ +G+  
Sbjct: 306 TVPQQAVLRTPGGSAVMVVGADGKVASRPVQTGSSSGTAWI-ITDGLKEGDQVIVEGLQK 364

Query: 372 LTNGSKVKLVK 382
           +  G+ VK V+
Sbjct: 365 VQPGATVKPVQ 375


>gi|152981819|ref|YP_001351711.1| membrane fusion protein
           [Janthinobacterium sp. Marseille]
          Length = 416

 Score =  104 bits (260), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 157/316 (49%), Gaps = 11/316 (3%)

Query: 69  GTVTANASVTVTSRIDGHLQAVYFTEGQYVQKGQLLAQLDTRAYQAEVVQYQGTLAQSQA 128
           GT+       + +R +G++       G  V++G LLA +DT     ++ + + T AQ+  
Sbjct: 91  GTLQGIIEAPINARTNGYVTRWVKDIGDPVKRGDLLAVIDTPEVAQQLNEAKATQAQATT 150

Query: 129 QLVSARQTLDRYERLFAKDSLARQDLDTQRSTVLQYQGAVQAAQGQIQAAQLNIQYGRIT 188
            L  A+ T +R++ L  +D++++QDLD +R+ +     A  +++  +Q  Q  + Y RI 
Sbjct: 151 NLQLAKSTFERWDALRKRDAVSQQDLDEKRNALAVAVAADNSSKATVQRLQDQLGYSRIV 210

Query: 189 APVSGYVGLRLVDPGNVVHASDTTGIV-TITQTHPIAVKFSIPQASLKSVLGPLRQGQTL 247
           AP  G V  R +D G +V +  +T ++ T+ ++ P+ V   +PQ    S    ++ G T+
Sbjct: 211 APFDGIVTRRNIDIGTLVDSGGSTRVLFTLAKSDPLRVYVYVPQ----SYSTQIKAGNTV 266

Query: 248 PVQALEQQGTQSIASGKLMFVSNEVDTTTGSVQLKALFDNNDDALYPNQFVNVRLQVDTL 307
            +   E  G   +  GK+   +  +DT T ++Q+     N D  L P  +  V ++    
Sbjct: 267 GITLNEIPG--KVFDGKIARTAGAIDTVTRTLQVAIDLPNPDGVLLPGAYAQVAIKASGG 324

Query: 308 KQAIL-VPASSVQQSDSGKYVFVVNADNTVRRQ-VVSTGPVTDDGRIVISSGVKAGDQVV 365
             + L +P +++     G  V VV  D  VR Q VV    +  D  I ++SGV A D+++
Sbjct: 325 SASSLTIPNNTLLFRPEGPRVAVVGDDGKVRLQPVVIARELGVD--IELASGVTAQDKLI 382

Query: 366 TQGIDSLTNGSKVKLV 381
               DSL+NG  V ++
Sbjct: 383 INPADSLSNGDAVSVI 398


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 759,030
Number of extensions: 27249
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 15
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 15
Length of query: 406
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 321
Effective length of database: 906,776
Effective search space: 291075096
Effective search space used: 291075096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)