BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2681.p (503 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981442|ref|YP_001353371.1| outer membrane protein, tolC-li... 282 3e-77 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 277 8e-76 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 270 2e-73 gi|152979834|ref|YP_001352756.1| outer membrane efflux protein [... 167 1e-42 gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 161 1e-40 >gi|152981442|ref|YP_001353371.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 480 Score = 282 bits (722), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 191/456 (41%), Positives = 272/456 (59%), Gaps = 13/456 (2%) Query: 42 YKEAAGWKQA-APSDDQPRSAWWQAFGDEQLDALMRQVEISNQNVAQYAAQYAQAQAVVR 100 YKEA W++ A S WW F D L+ L ++ + N+N+ AQ A A+A V Sbjct: 33 YKEAGLWQEGTANSAANVPDDWWTLFQDPVLNDLEGRLVVGNENLKSLVAQVAAARAAVA 92 Query: 101 QADASFSPTVTATASGTRSGNASGTTSSKTTTSTTSTTSTTRSGVSNEVSASGSLSWELD 160 + ++ PT++ +G+R N S TT S TT SN VS SG+ SWE+D Sbjct: 93 ASYSARLPTLSVGLAGSRDSNPSSTTRS-----------TTVQNPSNNVSLSGNASWEVD 141 Query: 161 LWGKLRRTREEDVASAQASQADLANALLSAQSSLAQDYFSLRILDERIALYEKTVAAYTR 220 LWG+L + A+ QAS DLA A LSAQ++LAQ YFSLR D ++++ E++VAAY R Sbjct: 142 LWGRLAQATTGAQANLQASVDDLAAARLSAQATLAQTYFSLRTTDAQLSVLERSVAAYQR 201 Query: 221 YASIVENQYTEAQSSRADVAQARNQLESAKASMHDLAWQRAQYEHAIAILLGKAPAAFSL 280 + + +Y +R DV QA+ QL++A+A + + QRA EHAIA+LLG P+A +L Sbjct: 202 SLDLTQFRYGGGVVARVDVLQAQTQLKAAQAQLAEAIAQRAILEHAIAVLLGVPPSALAL 261 Query: 281 PAVIGGPMQVPVTPVGLASTLLERRPDIASSERSMAKANAAIGVAIAAYYPDLTLSASAG 340 P Q P+ P L +TLLERRPDIA+++R +A A A IGVA AAY+P L LSA G Sbjct: 262 ERNASLP-QAPLVPQMLPTTLLERRPDIAAAQRRVAAAYAQIGVAHAAYFPSLVLSAGGG 320 Query: 341 FQNSSASKLFTAPYRFWSLGPSFSQTLFDGGSIKAQVEQARASYDAAVASYRQTVLTALG 400 +QNSS S L +AP FWSLG S +Q +FDGG + QA++ D A ++YRQTVLTAL Sbjct: 321 YQNSSLSNLISAPNLFWSLGASVAQAIFDGGQRQLASAQAQSVADQATSAYRQTVLTALQ 380 Query: 401 QVEDYLAKMRIMESEMQAQQAATDAAIVSARVTRDQYEAGKINYLDVATTEATSLSAQQS 460 +VED L ++ E Q QQ + +AA + +T DQY AG ++YL+VA + T+L ++ + Sbjct: 381 EVEDNLILAAQLQQEAQLQQESLEAAQRTLEITLDQYRAGTVSYLNVAIAQTTALVSENN 440 Query: 461 LWELKGTQLTTSVQLIVALGGGWHADDGEASSAAHQ 496 L + +L + L+ + G W D+ +A A + Sbjct: 441 LLSTQNRRLAATNILLKNIAGRWEPDNPDAVKAMKE 476 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 277 bits (709), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 177/480 (36%), Positives = 263/480 (54%), Gaps = 38/480 (7%) Query: 21 LLAGCAVGPDYHRPTVDMPIAYKEAA---------GWKQAAPSDDQPRSAWWQAFGDEQL 71 +LAGC+ +D+P AY+E + WK AAP+D++ R AWW+ FGDEQL Sbjct: 16 VLAGCSTARPPEELKLDLPNAYREQSTVKANELDGAWKLAAPADNKDRGAWWKVFGDEQL 75 Query: 72 DALMRQVEISNQNVAQYAAQYAQAQAVVRQADASFSPTVTATASGTRSGNASGTTSSKTT 131 L+ + SN N+A A+ A+A+ DA V A TRSGNA G Sbjct: 76 SNLIVEAGNSNLNLAIALARVKDARAIAGVVDADRGVQVDAGVGPTRSGNAQGA------ 129 Query: 132 TSTTSTTSTTRSGVSNEVSASGSLSWELDLWGKLRRTREEDVASAQASQADLANALLSAQ 191 S + A S ++E+DL+G+L A+ +A + LL+ Q Sbjct: 130 --------------STQYRAPLSFAYEVDLFGRLSDASRAARLDAEGQEAAYRSVLLALQ 175 Query: 192 SSLAQDYFSLRILDERIALYEKTVAAYTRYASIVENQYTEAQSSRADVAQARNQLESAKA 251 S +AQ YF++R LD + + EKTVA + + ++ +S DVAQA+ + + A Sbjct: 176 SDVAQQYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAKTEWATTSA 235 Query: 252 SMHDLAWQRAQYEHAIAILLGKAPAAFSLPAVIGGPMQVPV--TPVGLASTLLERRPDIA 309 + + QRAQ +HA+AILLGKAPA F+LP P+ V P GL S LLERRPDIA Sbjct: 236 ELEGVKRQRAQRDHALAILLGKAPAEFTLPV---APLAAAVVTVPSGLPSDLLERRPDIA 292 Query: 310 SSERSMAKANAAIGVAIAAYYPDLTLSASAGFQNSSASKLFTAPYRFWSLGPS----FSQ 365 ++R +A ++A IG A AA++P L L+ SAG++++ LF R W LGP S Sbjct: 293 QAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPVVGTILSM 352 Query: 366 TLFDGGSIKAQVEQARASYDAAVASYRQTVLTALGQVEDYLAKMRIMESEMQAQQAATDA 425 LFDGG ++ + +A A+Y+A VA+YR VL VED L+ +R ++ ++Q ++ A ++ Sbjct: 353 PLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFEEQAVNS 412 Query: 426 AIVSARVTRDQYEAGKINYLDVATTEATSLSAQQSLWELKGTQLTTSVQLIVALGGGWHA 485 A +++R+ +Y G +Y +V + +SLS+Q+S G + SV LI ALGGGW A Sbjct: 413 AQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRALGGGWEA 472 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 270 bits (689), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 183/482 (37%), Positives = 275/482 (57%), Gaps = 11/482 (2%) Query: 8 LRLRPMAMACLLTLL--AGCAVGPDYHRPTVDMPIAYKEAAGWKQAAPSDDQPRSAWWQA 65 LR P A A LL LL GCAVGPDY RP + A+K AGW+ + P D + + AWW+ Sbjct: 3 LRRTP-AFASLLALLILGGCAVGPDYQRPDAPVAQAWKTEAGWQASNPRDGELKGAWWEI 61 Query: 66 FGDEQLDALMRQVEISNQNVAQYAAQYAQAQAVVRQADASFSPTVTATASGTRSGNASGT 125 F D +L+AL Q + Q + A+ QA+A A++SF P + G ++G+A Sbjct: 62 FRDAELNALQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKI-----GAQAGSARNR 116 Query: 126 TSSKTTTSTTSTTSTTRSGVSNEVSASGSLSWELDLWGKLRRTREEDVASAQASQADLAN 185 TS++ T+ S S V N+ +A+ ++S+ELDL+G++RR E A+AQ +QAD N Sbjct: 117 TSAER--PLTNYNSQNSSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFEN 174 Query: 186 ALLSAQSSLAQDYFSLRILDERIALYEKTVAAYTRYASIVENQYTEAQSSRADVAQARNQ 245 L + LA DY LR D I + ++T+ A T+ + ++ +S D+ Q + Sbjct: 175 TRLVLTAELAADYLVLRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGL 234 Query: 246 LESAKASMHDLAWQRAQYEHAIAILLGKAPAAFSLPAVIGGPMQVPVTPVGLASTLLERR 305 + + + L QRA+Y++AIA L+G F LP + P P+ + LLERR Sbjct: 235 TAATQTQLTLLQDQRARYQNAIATLVGVPAPDFKLPVNLA-VTTAPAIPLTAPAALLERR 293 Query: 306 PDIASSERSMAKANAAIGVAIAAYYPDLTLSASAGFQNSSASKLFTAPYRFWSLGPSFSQ 365 PDIA++ER+MA ANA IGVA +AY+P L LS G + S LF+AP WS+G S +Q Sbjct: 294 PDIAAAERAMAAANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGVSATQ 353 Query: 366 TLFDGGSIKAQVEQARASYDAAVASYRQTVLTALGQVEDYLAKMRIMESEMQAQQAATDA 425 +FDGG A V+ A+A Y A+ +YRQ+VL A+ +V+D L + + + + A D+ Sbjct: 354 MIFDGGRTSANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAADS 413 Query: 426 AIVSARVTRDQYEAGKINYLDVATTEATSLSAQQSLWELKGTQLTTSVQLIVALGGGWHA 485 A S ++ D+Y++G L+V + T LS ++ +L G +L +V+LI ALGGGWHA Sbjct: 414 ADRSLGLSTDRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGGGWHA 473 Query: 486 DD 487 + Sbjct: 474 HE 475 >gi|152979834|ref|YP_001352756.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 471 Score = 167 bits (424), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 232/462 (50%), Gaps = 24/462 (5%) Query: 25 CAVGPDYHRPTVDMPIAYKEAAGWKQAAPSDDQPRSAWWQAFGDEQLDALMRQVEISNQN 84 CA D +P ++MP A W +A+ + + + WW+ FG ++L L+ Q +N + Sbjct: 25 CAGRIDATKPNLEMP------ASWTEASSATAELQRDWWRGFGSDELSGLIDQALANNPD 78 Query: 85 VAQYAAQYAQAQAVVRQADASFSPTVTATASGTRSGNASGTTSSKTTTSTTST--TSTTR 142 + A + QA+ R A AS P +T +A+ +G SSK + T+T T Sbjct: 79 LNIAAERVTQAEITARLAGASLFPLLTVSAN-------TGVGSSKPGQTATATGWTRNES 131 Query: 143 SGVSNEVSASGSLSWELDLWGKLRRTREEDVASAQASQADLANALLSAQSSLAQDYFSLR 202 SGV+ V+ +E+D+WG++ AS AS+ D+ L+ + +A YF Sbjct: 132 SGVALAVA------YEVDVWGRVAAVASGANASLNASRYDMETVRLTLTTGVANAYFQTL 185 Query: 203 ILDERIALYEKTVAAYTRYASIVENQYTEAQSSRADVAQARNQLESAKASMHDLAWQRAQ 262 L R+ + ++ +A + SIVE +Y +S D+++ R + + + + L Q Q Sbjct: 186 ALRVRLKVAQENLAIAEKVYSIVEARYRFGSASALDMSRQRGAVLAQRNILLPLQVQERQ 245 Query: 263 YEHAIAILLGKAPAAFSLPAVIGGPMQVPVTPVGLASTLLERRPDIASSERSMAKANAAI 322 A+AILLG+ P A + A + VP GL STL+ RRPD+AS E + A+A + Sbjct: 246 TVSALAILLGRQPQALQVAAQDLNVLTVPEVSPGLPSTLITRRPDLASVEAQLFAADANV 305 Query: 323 GVAIAAYYPDLTLSASAGFQNSSASKL-FTAPYRFWSLGPSFSQTLFDGGSIKAQVEQAR 381 A AA P ++L+ +AG NSSA+ L P L SF QTLFDG ++ QVE + Sbjct: 306 AAARAALLPTISLTGAAG--NSSAALLALGNPAYSVGLTASFVQTLFDGNRLRLQVETSE 363 Query: 382 ASYDAAVASYRQTVLTALGQVEDYLAKMRIMESEMQAQQAATDAAIVSARVTRDQYEAGK 441 + V SYR+TV +L +V+D L+ ++ QAQ + A + +++ +Y G Sbjct: 364 SVRRQLVESYRRTVYASLKEVDDALSNASRNLAQEQAQIEIRNEARRALQLSELRYREGA 423 Query: 442 INYLDVATTEATSLSAQQSLWELKGTQLTTSVQLIVALGGGW 483 + + + T +A + + + +LT + + +LGGGW Sbjct: 424 DDLNTLLDAQRTLFAADDQVAQQRLLRLTGTTDVFKSLGGGW 465 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 161 bits (407), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 134/472 (28%), Positives = 232/472 (49%), Gaps = 31/472 (6%) Query: 21 LLAGCAVGPDYHRPTVDMPIAYKEAAGWKQAAPSDDQPRS---AWWQAFGDEQLDALMRQ 77 +L+ C++ P Y RP D P+A K ++Q R+ W F D +L L+ Sbjct: 13 VLSACSMAPKYVRP--DAPVAADYGVPSK---ADNNQVRAVDIGWRNFFTDPRLQVLIGN 67 Query: 78 VEISNQNVAQYAAQYAQAQAVVRQADASFSPTVTATASGTRSGNASGTTSSKTTTSTTST 137 +N+++ A + +A+A+ A PT+ A+G+R+ + S ++T Sbjct: 68 AIANNRDLRVAALRIEEARALYNIQSADLLPTLNVNATGSRA---------RVPASISNT 118 Query: 138 TSTTRSGVSNEVSASGSLSWELDLWGKLRRTREEDVASAQASQADLANALLSAQSSLAQD 197 S+ S SN G ++ELD +G++R + +A+ +++ A +S S +A+ Sbjct: 119 GSSVVS--SNYQVGLGLAAFELDFFGRVRSLSDAALAAYLSTEEAQRAAQISLVSEVAKA 176 Query: 198 YFSLRILDERIAL----YEKTVAAYTRYASIVENQYTEAQSSRADVAQARNQLESAKASM 253 Y S R E+ L YE V AY + + ++ SS D+ L++A+A+ Sbjct: 177 YLSERSFAEQQDLARQTYESRVEAY----KLSKQRFEVGASSALDLRNDEALLQTARAAE 232 Query: 254 HDLAWQRAQYEHAIAILLGKAPAAFSLPAVIGGPMQVPVT--PVGLASTLLERRPDIASS 311 QRAQ +A+ +L+G+ LP Q +T P GL S LL +RPDI S+ Sbjct: 233 LLAQRQRAQAMNALTLLVGQPLT--DLPPAQALSSQTILTDIPAGLPSDLLTQRPDIRSA 290 Query: 312 ERSMAKANAAIGVAIAAYYPDLTLSASAGFQNSSASKLFTAPYRFWSLGPSFSQTLFDGG 371 E+++ ANA IG A AA++P ++L+A G ++ + LF R WS P +FD G Sbjct: 291 EQTLLSANANIGAARAAFFPRISLTAGLGTSSNELAGLFEGGSRSWSFAPQLVLPIFDAG 350 Query: 372 SIKAQVEQARASYDAAVASYRQTVLTALGQVEDYLAKMRIMESEMQAQQAATDAAIVSAR 431 + + A D AVA+Y +++ A +V D L +++ +++AQ+ +A + Sbjct: 351 RNRGNLNLAEVRKDIAVANYEKSIQVAFREVSDALVARDLLDQQVEAQRLVQEAQAERFK 410 Query: 432 VTRDQYEAGKINYLDVATTEATSLSAQQSLWELKGTQLTTSVQLIVALGGGW 483 +++ G + LDV + +AQ SL +++ T+LT +V L +LGGG Sbjct: 411 FATQRFQNGIASSLDVLDAQRELFTAQLSLVQVRLTRLTNAVDLYRSLGGGL 462 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.122 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 936,355 Number of extensions: 31173 Number of successful extensions: 179 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 11 Length of query: 503 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 416 Effective length of database: 899,382 Effective search space: 374142912 Effective search space used: 374142912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)