BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2680.p (328 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982513|ref|YP_001353581.1| LuxR family transcriptional reg... 229 2e-61 gi|152983465|ref|YP_001351749.1| two-components system response ... 82 5e-17 gi|152982489|ref|YP_001354645.1| twitching motility two-componen... 77 1e-15 gi|152981322|ref|YP_001355016.1| two components system response ... 75 4e-15 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 73 2e-14 >gi|152982513|ref|YP_001353581.1| LuxR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 313 Score = 229 bits (583), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 136/307 (44%), Positives = 177/307 (57%), Gaps = 23/307 (7%) Query: 1 MISTTFDRHVVLIVDDMPDNLAMLSDALDESGHIVLVATDGQAALERLDHITPDLILLDA 60 +I DR VVL+VDD P +L +L + L+ +G+ VLVA DG AL RL +TPD+IL+DA Sbjct: 7 LIDNPDDRPVVLLVDDAPSSLGVLCETLEGAGYTVLVACDGDTALRRLSLVTPDVILMDA 66 Query: 61 MMPGIDGFETCRRIKQVKRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVA 120 +MPGI GF+ CRRIK H+PV+FMTGLS+T HV+ GF GG+DYV KP+R EV+A Sbjct: 67 VMPGISGFDACRRIKADLSTKHIPVIFMTGLSDTSHVLEGFACGGVDYVVKPVRAPEVLA 126 Query: 121 RIGAHIRTARLMTQTRGVLEHAAHAVIVLGGNGLPMWQTSKASQWLEKY-YGPAAPTSHK 179 R+ H+ AR+ ++ + VI+L G W + A Q L ++ P A Sbjct: 127 RLHTHLGNARMARFALDAIDVSGLGVIMLNEEGAISWCSPCARQLLTQFGIDPEA----- 181 Query: 180 LPAPLQVWLNEQLVRQRQGGSLDHVPPLIVRHQQDALHITLSGPGQGHGVSLVLEEKTAS 239 L P W + + L+VR+ A G ++L E + + Sbjct: 182 LTVPQSWWKGSSGMELVASVTEPAGASLLVRNMGAA----------GMDEIMLLIELSGN 231 Query: 240 AALRTDEGMSLPPTLESCRLTPRESDVLLWLGKGKTNRDIAEILGMSPRTVNKHLEHIFV 299 AL T L S LTPRE++VL WL KGKTNRDI EIL MSPRTV+KHLEHIF Sbjct: 232 HALPTGR-------LASAALTPRETEVLSWLAKGKTNRDIGEILKMSPRTVSKHLEHIFE 284 Query: 300 KLGVETR 306 KLGVETR Sbjct: 285 KLGVETR 291 >gi|152983465|ref|YP_001351749.1| two-components system response regulator colR [Janthinobacterium sp. Marseille] Length = 227 Score = 82.0 bits (201), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 12 LIVDDMPDNLAMLSDALDESGHIVLVATDGQAALERLDHITPDLILLDAMMPGIDGFETC 71 LI++D PD +A L L+ G+ + VA G A + R D+I+LD +PG+DG E C Sbjct: 4 LIIEDNPDIVANLYGFLEPLGYTLDVALSGPAGVARATSSHYDVIVLDLELPGLDGVEVC 63 Query: 72 RRIKQVKRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVARIGAHIRTAR 130 R++++ +R+A P++ +T + + GFEVG DY+ KP E+ AR+ A +R AR Sbjct: 64 RKLRKEQRLA-TPILMLTARDTVKDKLVGFEVGADDYLVKPFSLVELEARLKALVRRAR 121 >gi|152982489|ref|YP_001354645.1| twitching motility two-component response regulator transcription regulator protein [Janthinobacterium sp. Marseille] Length = 121 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 62/114 (54%) Query: 11 VLIVDDMPDNLAMLSDALDESGHIVLVATDGQAALERLDHITPDLILLDAMMPGIDGFET 70 +L+VDD P L+D L + G V A +G+ AL ++ P LIL+D +MPG +GF+ Sbjct: 6 ILVVDDSPTERYFLTDILIKRGFSVSTAENGEEALLKIKADKPQLILMDIVMPGQNGFQV 65 Query: 71 CRRIKQVKRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVARIGA 124 R I + VP++ T + + G G DY+ KP+ P E++++I A Sbjct: 66 TRSITRDPETQDVPIIICTSKGQETDRIWGLRQGARDYIVKPVDPAELLSKIAA 119 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 75.5 bits (184), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 1/137 (0%) Query: 11 VLIVDDMPDNLAMLSDALDESGHIVLVATDGQAALERLDHITPDLILLDAMMPGIDGFET 70 +LIVDD + +L+ L+++G +A +G+ L+ + DLI+LD M+PG DG Sbjct: 7 ILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLTL 66 Query: 71 CRRIKQVKRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVARIGAHIRTAR 130 CR ++ K +PV+ +T +E + G E+G DY++KP +E+ ARI + +R AR Sbjct: 67 CRELRAGK-WRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRAR 125 Query: 131 LMTQTRGVLEHAAHAVI 147 ++ V E A V Sbjct: 126 MLPANLQVSEPAQFLVF 142 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 11 VLIVDDMPDNLAMLSDALDESGHIVLVATDGQAALERLDHITPDLILLDAMMPGIDGFET 70 +L+V+D + L L E+G +V A DG L+ + +L++LD M+P +DG++ Sbjct: 3 ILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGWQL 62 Query: 71 CRRIKQVKRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVARIGAHIR 127 R +++V+ PV+F+T E E V+G E+G DY+ KP E++AR+ +R Sbjct: 63 LRELRKVR---DTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLR 116 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 790,482 Number of extensions: 34087 Number of successful extensions: 200 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 199 Number of HSP's successfully gapped: 24 Length of query: 328 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 244 Effective length of database: 910,473 Effective search space: 222155412 Effective search space used: 222155412 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)