BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2679.p (1140 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons... 1107 0.0 gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/re... 199 1e-51 gi|152982741|ref|YP_001352306.1| hybrid two-components system re... 150 5e-37 gi|152982497|ref|YP_001353355.1| two-component hybrid sensor and... 137 6e-33 gi|152982481|ref|YP_001353348.1| signal transduction histidine k... 118 2e-27 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 1107 bits (2863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 583/1098 (53%), Positives = 767/1098 (69%), Gaps = 23/1098 (2%) Query: 30 LRYTPLSFRRWSEFRLANTALGATSFLALEAISGAITLSYGFTNAFWAIVCVVVLFFLTG 89 +RYTP FR+WSE++L N A GA SFLALEAI GAI L+YGF NA AI+ V+++ FLTG Sbjct: 1 MRYTPRHFRKWSEWQLGNAAFGAASFLALEAIGGAIALNYGFANAVTAILTVMLITFLTG 60 Query: 90 LPISYYAARYGVDMDLLTRGAGFGYIGSTITSLIYASFTFIFFALEAAIMAQAIEIYFGL 149 LPISYYAARYG+DMDLLTRGAGFGY+GSTI+SLIYASFT IFFALEAAI+A A++++ Sbjct: 61 LPISYYAARYGIDMDLLTRGAGFGYMGSTISSLIYASFTIIFFALEAAILAVALQMWIQW 120 Query: 150 PLVYGYVLCSLIIIPMVAYGITLINRLQMWTQPLWLVLLVLPYVCVLYKEPEALSNLLSF 209 PL YV+C+L I+P+VA GITLI+RLQMWTQPLWL+LLV PY+ + +K+PEA + F Sbjct: 121 PLWIWYVICALFIVPLVARGITLISRLQMWTQPLWLILLVAPYIAIFWKKPEAYTEFAQF 180 Query: 210 AGRAEEGSSFNLTLFGAAATVAFSLIAQVGEQVDFLRFLPQKTSANRGRWWGALLLAGPG 269 G + +S + +FG AATVAFSL+AQ+GEQVDFLRFLP++T+ N+ RWW A+++AG G Sbjct: 181 VGAISKSNSLDPVMFGVAATVAFSLVAQIGEQVDFLRFLPERTAENKRRWWTAIIVAGAG 240 Query: 270 WILLGGAKMLGGTLLAFLAIQHEVPMARAVEPTQMYLIGYQYVFGNPALALGAVVLFVVV 329 WI+ GG KMLGG LA+L Q VP A+EPT+MYL+G+ Y+F +P L +LFVVV Sbjct: 241 WIIPGGLKMLGGAFLAYLVFQSGVPAGNAMEPTRMYLLGFSYLFSDPVWILAITLLFVVV 300 Query: 330 SQIKINVTNAYAGSLAWSNFFARLTHSHPGRVVWLVFNVLIAVLLMELGVFNALEHVLAL 389 SQ+KIN+TNAYAGSLAWSNFFARLTHSHPGRVVWLVFN L+A+LLM LGVF ALE+VL L Sbjct: 301 SQVKINLTNAYAGSLAWSNFFARLTHSHPGRVVWLVFNCLLALLLMNLGVFAALENVLGL 360 Query: 390 YSLVAISWIGAVVADLVINKPLRLSPAHIEFKRAHLYDVNPVGVGSMTIATLLSTLAMSG 449 YS VA++W+GA+VADLVINKPL SP IEFKRAHLYD+NPVG+G+M ++ + A SG Sbjct: 361 YSNVAVAWVGALVADLVINKPLGWSPKGIEFKRAHLYDINPVGLGTMLLSASIGIAAFSG 420 Query: 450 VLGKTVAAMAPFIALGTALVSAPLIAVATGSRYYIARRDTLSEQSYRPYTPGQAHSVLDC 509 V G VAA +PFI LG A + +PL+A T RYY+AR+ T PGQA + C Sbjct: 421 VWGHKVAAFSPFITLGMAFLVSPLLAWLTRGRYYLARKPTAVG------LPGQA---VKC 471 Query: 510 VICGNAFETPDMAHCPAYQGAICSLCCSLDARCKDRCKTPRARLPNQILHTLRQLIPARF 569 +C N+FE+ DMAHCPAY ICSLCC+L++RC D CK +R Q L L+P Sbjct: 472 GVCDNSFESEDMAHCPAYGAPICSLCCTLESRCHDLCKK-ESRTAEQAQQLLSALLPNAL 530 Query: 570 TLKLNTRIGHYLAVFGLLAGGLAIVLWMLYFQQMADLSGLTLSAPDS--LRGVFIKLFCL 627 + +N R+G+Y+ V L A L ++Y Q+++ L+ SA D L +F+K+ + Sbjct: 531 SHLVNRRVGNYMVVVLSLCAVGAAALGLVYAQEISTLT----SAGDRLLLDSIFLKISAV 586 Query: 628 LLVVVGVGAWWLVLTNESRAVAQEESERQTNLLLQEIEAHKQTDAELQRAKEAAESANLA 687 LL++V V +WW+VL +E R +AQ++ RQ LL QEI+AH++TDA LQ AKEAAESAN A Sbjct: 587 LLIIVAVSSWWVVLGSEGRHLAQDDLNRQNELLTQEIDAHQRTDAALQSAKEAAESANQA 646 Query: 688 KSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKEAIAIIRRSGEHLLSLIDGLLDI 747 K+R+VAG+SHELR+PLNSILGY+QIL + + A + AI I+RSGEHLL L+D LLD+ Sbjct: 647 KTRYVAGISHELRSPLNSILGYSQILLKNEQLDAAPRTAIQTIQRSGEHLLGLVDELLDL 706 Query: 748 AKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLQFRFEKTGRLPQIVHADQKRLRQ 807 A+IEA +MRL + AF++ ++ M PQAE KGL+ ++ G LP V AD KRLRQ Sbjct: 707 ARIEADRMRLEPAPILFAAFIDDLLSMVRPQAEAKGLRLQYTHGGDLPHYVLADGKRLRQ 766 Query: 808 ILINLLGNAVKFTDRGGVTLKLRYAREIAYFDVIDTGIGIAEDDLERIFLPFERSSAANL 867 ILINLL NA++FTD G VTL + FDVIDTGIGIA D +RIF PFER +A L Sbjct: 767 ILINLLTNALRFTDTGSVTLHVECTGVSMRFDVIDTGIGIAVQDRQRIFQPFERGAAGRL 826 Query: 868 REDIGTGLGLAISRMLVHIMGGELGVQSQVGQGSSFHLKIYLPEVHVPRPRIPLEDQMSG 927 R + G GLGLAI+ L+ +M G L + S GQGS+F +++ L E++ +P D + G Sbjct: 827 RGEPGAGLGLAITEKLILMMNGSLNLISTQGQGSTFVVRLPLMEINAFEA-LPQRDVI-G 884 Query: 928 YLGRSRHILVVDDQASQRRLLQDMLLPLGFTVSQADSGLACMERLAHEVPDLVLLDIAMP 987 + G +R +LVVDDQ QR +L ML+PLGF V +A SG C++ L VPD +LLDI M Sbjct: 885 HTGVARTLLVVDDQPVQRHMLSGMLIPLGFNVREAASGHECIDLLQDFVPDAILLDIGMD 944 Query: 988 QMDGWTVARAIRARGLTQLPILLVSANAFENLHERNEPPLVNDFVVKPVSYNELLGKIRQ 1047 MDGW AR +RA + +PI+ VSA+ FEN + + DFV KPV +EL+ +++ Sbjct: 945 GMDGWETARRVRAS--SGIPIIFVSADLFENDPVKLKAAGCQDFVGKPVLESELMLALQR 1002 Query: 1048 HLQLDWV-ATPAAPAVVSQSL--MLVPTQDKLAALLELGHIGYAKEILRQLDALESGNPA 1104 L L+W+ A+ P V+++L L Q + LL+L +G+ + R +D L + + Sbjct: 1003 QLGLEWIYASTPPPVPVTEALPERLEFRQPSIEQLLQLTRMGHVSGLRRAVDRLAAADAT 1062 Query: 1105 YLPFTTELRLLVKQFRLN 1122 + +R L+ +F L Sbjct: 1063 VVASCNVVRSLLDRFELG 1080 >gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 702 Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 238/461 (51%), Gaps = 38/461 (8%) Query: 598 LYFQQMADLSGLTLSAP--DSLRGVFIKLFCLLLVVVGVG----AWWLVLTNESRAVAQE 651 LY Q + D + + P +L + +L ++ + G + L N SR + + Sbjct: 251 LYIQTLNDANEYVICCPLQRALSEIEHRLIDVMCTNISAGLANVQLYESLLNLSRNLEHQ 310 Query: 652 ESERQTNLLLQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQ 711 ER +L + AK+ AESAN AKS F+A MSHE+RTP+N +LG Q Sbjct: 311 VVERTRDLSI---------------AKDEAESANRAKSEFLAVMSHEIRTPMNGMLGMMQ 355 Query: 712 ILHVDATIPPARKEAIAIIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQI 771 L + T ++E + + S E LLS+++ +LD +K+E+G ++ + + L ++ + Sbjct: 356 -LALAETSDRTQREHLETAQYSAEALLSILNDILDFSKLESGNLQFEAAQFDLLKTMDSV 414 Query: 772 VGMFAPQAEQKGLQFRFEKTGRLPQIVHADQKRLRQILINLLGNAVKFTDRGGVTLK--- 828 + + A ++ L E +P+++ D RLRQ+L+NL+ NA+KFT++GGVTLK Sbjct: 415 INLMASRSCDASLALAVECPAEIPRMLVGDANRLRQVLLNLINNALKFTEQGGVTLKVAL 474 Query: 829 --LRYAREIAYFDVIDTGIGIAEDDLERIFLPFERSSAANLREDIGTGLGLAISRMLVHI 886 L + F VID+GIGIA + R+F F ++ + R GTGLGL+I + +V + Sbjct: 475 LNLNAGQARMRFSVIDSGIGIAPEAQARLFQAFSQADNSISRRFGGTGLGLSICKKIVDM 534 Query: 887 MGGELGVQSQVGQGSSFHLKIYL---PEVHVPRPRIPLEDQMSGYLGRSRHILVVDDQAS 943 GG +GV S G+GS F ++ EV V P + S R IL+ +D Sbjct: 535 QGGSIGVHSAEGKGSEFWFELQFGVGGEVEVT-PEVLAAPAKS---TRQLRILLAEDNEI 590 Query: 944 QRRLLQDMLLPLGFTVSQADSGLACMERLAHEVPDLVLLDIAMPQMDGWTVARAIRARG- 1002 +++ +L G TV A +GL ++ + + V D+VL+D+ MP+MDG RAIR Sbjct: 591 NQKVAATLLKKAGHTVEIAQNGLEAVQAVQNSVFDVVLMDMHMPEMDGLAATRAIRNMSG 650 Query: 1003 -LTQLPIL-LVSANAFENLHERNEPPLVNDFVVKPVSYNEL 1041 LPI+ L +A A ++ + + N F+VKP L Sbjct: 651 PAATLPIVALTAAGALSDIQICMDAGM-NYFLVKPFRMERL 690 >gi|152982741|ref|YP_001352306.1| hybrid two-components system response regulator and sensor kinase [Janthinobacterium sp. Marseille] Length = 948 Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 94/252 (37%), Positives = 140/252 (55%), Gaps = 7/252 (2%) Query: 663 EIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPA 722 +I AHKQ L +AK A+ AN AK+ F+ MSHELRTPL+ +LG ++ + A + Sbjct: 449 DITAHKQIHESLLKAKLHADDANTAKTLFLTTMSHELRTPLHGLLGALELFSLTA-VTDQ 507 Query: 723 RKEAIAIIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQK 782 ++ + +++S LL + LDIA+IEAG L + + A LE+++ +A AE+K Sbjct: 508 QRMYLHAMQQSSSILLKTVSQTLDIARIEAGAFELETTAFSSLALLEEVIAAYAAPAERK 567 Query: 783 GLQFRFEKTGRLPQIVHADQKRLRQILINLLGNAVKFTDRGGVTLK-----LRYAREIAY 837 L +P+++ D R++QIL NL+ NA+KFTD G V L+ L + Sbjct: 568 ALCICGVPDPAIPELLVGDVTRIKQILNNLMSNAIKFTDSGQVVLRSRLLNLEHGMATIV 627 Query: 838 FDVIDTGIGIAEDDLERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELGVQSQV 897 V D+G GI + L RIF PF + N + GTGLGL+I R +MGG + S+ Sbjct: 628 LQVEDSGRGIDQVHLGRIFEPFYQVE-QNAQLKSGTGLGLSICRRFAQMMGGTIWAMSEP 686 Query: 898 GQGSSFHLKIYL 909 G G+SF L + L Sbjct: 687 GSGTSFSLTVSL 698 >gi|152982497|ref|YP_001353355.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 599 Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 103/317 (32%), Positives = 171/317 (53%), Gaps = 9/317 (2%) Query: 675 QRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKEAIAIIRRSG 734 +R+KE+A+ +N AKS+F+A SH+LR P++++ Y +L + ++ ++ + I R+ Sbjct: 214 ERSKESADRSNQAKSQFLAAASHDLRQPVHALSLYVGVLR-EQSLNAKSRQLVDHIERAT 272 Query: 735 EHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLQFRFEKTGRL 794 + L DGLL+I++++AG +R +L A L+Q+ +AP+A K L R + G + Sbjct: 273 AAMGRLFDGLLNISRLDAGVIRPRLRHCSLAALLDQLQLEYAPRAATKSLVLRLHR-GVV 331 Query: 795 PQIVHADQKRLRQILINLLGNAVKFTDRGGVTLKLRYAREIAYFDVIDTGIGIAEDDLER 854 P V++D L +IL NL+ NA++ T GGV + R + +V DTG+GIA D E+ Sbjct: 332 PA-VYSDPVLLDRILRNLVDNAIRHTQSGGVLIACRRRGKFVQVEVWDTGVGIAAADQEK 390 Query: 855 IFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELGVQSQVGQGSSFHLKI---YLPE 911 IF+ F + + G GLGLAI R ++G L ++S+ G+GS F L + + E Sbjct: 391 IFMEFHQVGNPERNQSKGLGLGLAIVRRTADLLGHRLILRSRPGRGSVFKLSLPVHSVAE 450 Query: 912 VHVPRPRIPLEDQMSGYLGRSRHILVVDDQASQRRLLQDMLLPLGFTVSQADSGLACMER 971 H + D G L + I VV+D ++ +L G+ V A SG ++ Sbjct: 451 GHAMTASVSQPDHAPG-LPSGQMIFVVEDDEDNLHGIRLLLETWGYQVVAAASGDEIVQA 509 Query: 972 LAH--EVPDLVLLDIAM 986 + EVP L+L D + Sbjct: 510 AGNCPEVPALILTDFRL 526 >gi|152982481|ref|YP_001353348.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 459 Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 102/377 (27%), Positives = 176/377 (46%), Gaps = 13/377 (3%) Query: 675 QRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKEAIAIIRRSG 734 Q + AESAN + F++ ++HELR PL I A +L +T P + II R Sbjct: 84 QDMQAKAESANHRQEEFLSMLAHELRNPLAPIAMAADLLGKISTAHPLLPKLHGIISRQV 143 Query: 735 EHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLQFRFEKTGRL 794 H+ L+D L+D +++ G + L L L +E V P +++ Q T + Sbjct: 144 SHMAHLVDDLVDASRVSTGNITLQKRSLLLAEIIESAVETSQPFIDKRTQQL----TISM 199 Query: 795 PQ---IVHADQKRLRQILINLLGNAVKFTD-RGGVTLKLRYAREIAYFDVIDTGIGIAED 850 P I+H D RL Q NL+ NA KFT G + + ++ + D G+GIA D Sbjct: 200 PDASIIIHGDLVRLAQAFANLIINATKFTPVDGHIDILVQLQTSTVKVVIKDDGVGIAAD 259 Query: 851 DLERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELGVQSQVGQ-GSSFHLKIYL 909 IF F + + R G G+GL++ R +V + G + V S GS F +++ + Sbjct: 260 IQPYIFELFRQGPLSLDRSQGGLGIGLSLVRTVVEMHTGTVSVYSAGADLGSEFTVELPI 319 Query: 910 PEVHVPRPRIPLEDQMSGYLGRSRHILVVDDQASQRRLLQDMLLPLGFTVSQADSGLACM 969 + E + IL+++D A+ +L +L G T++ A G + + Sbjct: 320 AAEFIKDDE---EGDAPADAIQGCRILLIEDNANANEILSHLLTMEGHTLTSAFDGTSGL 376 Query: 970 ERLAHEVPDLVLLDIAMPQMDGWTVARAIRARGLTQLPILLVSANAFENLHERNEPPLVN 1029 E + D+++ DI +P +DG+ V R +R +P+ + + + ++ N + Sbjct: 377 EMAKDNIYDVIVCDIGLPGIDGYEVLRRLRLHTAKPVPLCIAISGYSQQENKMNAASVGF 436 Query: 1030 D-FVVKPVSYNELLGKI 1045 D ++VKPV+ + L+ I Sbjct: 437 DHYMVKPVAIDALVNFI 453 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,496,335 Number of extensions: 103567 Number of successful extensions: 613 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 572 Number of HSP's successfully gapped: 32 Length of query: 1140 Length of database: 1,221,021 Length adjustment: 94 Effective length of query: 1046 Effective length of database: 873,503 Effective search space: 913684138 Effective search space used: 913684138 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 135 (56.6 bits)