BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2678.p
         (418 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980511|ref|YP_001353496.1| branched-chain amino acid trans...   283   1e-77
gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino a...    68   1e-12

>gi|152980511|ref|YP_001353496.1| branched-chain amino acid
           transport system substrate-binding protein
           [Janthinobacterium sp. Marseille]
          Length = 417

 Score =  283 bits (724), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 167/408 (40%), Positives = 241/408 (59%), Gaps = 29/408 (7%)

Query: 14  RRKILMGLAAGAAAAALPGMASAQQYPTAKVNTTKLAITDTEVTVGQLHSATGTMAISET 73
           RR IL   A GA       +A++   P+A    T        + VG LHS +GTMAISET
Sbjct: 3   RRNILKATALGAFT-----LATSSWLPSAFAADT--------IKVGILHSLSGTMAISET 49

Query: 74  GSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLLENDRVAAVFGCWTS 133
                  + ID+INA GG++G+K++ +  D AS+WP FAEKA++L+  D+V+ VFGCWTS
Sbjct: 50  SLKDVALMTIDEINANGGVMGKKLEAVIVDPASNWPLFAEKARQLISQDKVSVVFGCWTS 109

Query: 134 ASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQVLAGLNWVAKEK--KAKT 191
            SRK+VLPVF++ N LL+YP  YEG E  KNVFYTG    QQ +    ++  ++   AK 
Sbjct: 110 VSRKSVLPVFKELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPATEYLMSKEGGGAKR 169

Query: 192 FFLVGSDYIWPRTSNKIARKHIENV-LKGSVVGEEYYPLGNTQFGSLINKIK---LKKPD 247
           F L+G+DY++PRT+NKI R  + +  ++ S + E Y P G++ + +++  IK        
Sbjct: 170 FVLLGTDYVYPRTTNKILRAFLHSKGVRDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKT 229

Query: 248 VIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENVEGFFASMKYFQS 307
            + + + G SNV FYK+L  AG+ A    ++  SV E+E+ G+  + + G  A+  YF+S
Sbjct: 230 AVISTINGDSNVPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFES 289

Query: 308 LDNPNNKKFVAEFK----AKFGANS---VIGDVTQAAYLGPWLWKAAVEKAGSFDVDKVV 360
           + NP N  F+ ++K    AK   N+   V  D  +A Y+G ++WK AVEKA S D DKV+
Sbjct: 290 VKNPVNAGFIKKWKDYAVAKKLPNAKTVVTNDPMEATYVGLYMWKQAVEKAKSTDTDKVI 349

Query: 361 AASPGIELKTAPEGYVKVHE--NHHLWSKTRIGEAQKDGQFKVVYESE 406
           AA  G   K AP GY    +  NHHL     IGE + DGQF VV +++
Sbjct: 350 AAMAGQTFK-APSGYTLEMDKTNHHLHKPVMIGEIKADGQFNVVNKTK 396


>gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino acid
           transport systems, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 431

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 162/386 (41%), Gaps = 43/386 (11%)

Query: 5   SSSNPPSFPRRKILMGLAAGAAAAALPGMASAQQYPTAKVNTTKLAITDTEVTVGQLHSA 64
           SS +  S  RR +L     G A   L   A AQ  P               + VG +   
Sbjct: 6   SSVHVSSIQRRTVLKAAGVGVATGLLGMPAFAQNKP---------------LRVGIIAPR 50

Query: 65  TGTMA-ISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLLENDR 123
            G    I E G ++       +INA GGI GRK++++ ++  S   T  ++ +KL+  ++
Sbjct: 51  GGVAGTIGECG-LRGVEWTTARINAAGGIGGRKVELVIQEETSPKDTI-DRFRKLVLQEK 108

Query: 124 VAAVFGCWTSASRKAVLPVFEKDNGLLYYPT-FYEGLEQS---------KNVFYTGQEAT 173
           V  V G  +S    A+ P  E        PT F++G  Q          K VF +     
Sbjct: 109 VDCVQGIVSSGVSLALAPAAEDSR----MPTIFWDGTTQDGVKETMPKPKYVFRSTDNEC 164

Query: 174 QQVLAGLNWVAKEK-KAKTFFLVGSDYIWPRTSNKIARKHIENV-LKGSVVGEEYYPLGN 231
           + V+A L  +   K K K    V  DY + R +    +  ++   ++  VV E++  +GN
Sbjct: 165 EAVMASLLAIKHFKGKFKRIACVNPDYSYGRNTWTAFQALLKKYGIEHEVVSEQWSKIGN 224

Query: 232 TQFGSLINKIKLKKPDVIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLG-- 289
               S +  +K  KPD+IF+ ++      F KQ   AG+T  T+ +L  +  +   +   
Sbjct: 225 LDLTSNVAALKAAKPDLIFSSLLFADLPVFMKQAHNAGLTEGTRFVLPAAGWQHTAMKKE 284

Query: 290 IGGENVEGFFASMKYFQSLDNPNNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVE 349
              E +     +M +     +   K+FV  +  K+            AY    ++KA VE
Sbjct: 285 FTPEGIVWGHNTMYFDDPKASATQKEFVKWYADKY--KDYPHWEADRAYFSMMVYKAGVE 342

Query: 350 KAGSFD-----VDKVVAASPGIELKT 370
           KA +        +++ AA PG+++++
Sbjct: 343 KALAAKKSWPTPEEICAAIPGVQIES 368


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 893,710
Number of extensions: 36541
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 3
Length of query: 418
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 332
Effective length of database: 903,079
Effective search space: 299822228
Effective search space used: 299822228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)