BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2676.p (401 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino a... 217 1e-57 gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino a... 69 4e-13 gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino a... 68 1e-12 gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino a... 60 2e-10 gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino a... 55 5e-09 >gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 365 Score = 217 bits (552), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 134/335 (40%), Positives = 189/335 (56%), Gaps = 8/335 (2%) Query: 18 LLVMAALLLVVFP----LTMDMFRLNLVGKYLSYAFVAVGLVLCWGYGGILSLGQGVFFG 73 +L + ++ + FP L + + + LVGK++ YA A+ L L WGY GILSLG GVFF Sbjct: 24 VLALLPIMNLCFPADHALHISSYTIALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFA 83 Query: 74 LGGYCMAMFLKLEASDPISTKIQSTPGIPDFMDWNQITALPAMWEPFHSFAFTIFAVLAV 133 LGGY M+L I +PDFM + P W F F + V+ V Sbjct: 84 LGGYAHGMYLM----RSIGRDGVYQSNLPDFMVFLNWKEYPWYWWMTEHFWFAMLLVVLV 139 Query: 134 PTVLAMLIGMAMFKRRVGDVYFSIVTQAIAAILSILIIGQQGLTGGVNGITDLKTLMGWD 193 P +LA + G F+ R+ VYFSI+TQA+ +L GG NG TD K ++G+ Sbjct: 140 PGLLAFIFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTDFKRILGFT 199 Query: 194 IRTDHAKLVLYFVNAGLLFGCILFGRYVLSSKLGRLLVAMRDKEERVRFSGYDVASFKVF 253 I K VLY V L + R +++SKLGR+L +RD E R+ F GY+ FK+F Sbjct: 200 ITDPSTKAVLYLVTLAFLLAALFVCRAIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLF 259 Query: 254 VFCAAAMFSAIGGAMFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLGAVYGTLLVNF 313 V+ +A+ I GA++ QVG ++PS + SIEMVI+AAVGGR SLLG + G VN Sbjct: 260 VWTLSAVVCGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGSLLGPIIGAFTVNG 319 Query: 314 GKTYFSETFPELWLFLMGGLFIAVVMYFPNGLAGL 348 K++F+ FP+LWL+ +G +FI V ++ P G+ GL Sbjct: 320 LKSWFTAAFPDLWLYALGLIFIFVTLFMPQGILGL 354 >gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 346 Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 139/321 (43%), Gaps = 34/321 (10%) Query: 34 DMFRLNLVGKYLSYAFVAVGLVLCWGYGGILSLGQGVFFGLGGYCMAMFLKLEASDPIST 93 D + L++V + A+ L L GY G LSLG FFGLG Y ++ Sbjct: 23 DPYLLSVVASVGIFVIAAISLNLLLGYTGQLSLGHVAFFGLGAYTTSLL----------- 71 Query: 94 KIQSTPGIPDFMDWNQITALPAMWEP-FHSFAFTI-FAVLAVPTVLAMLIGMAMFKRRVG 151 + G D W L +P + SFA I FA +A L+G F RV Sbjct: 72 ----SLGF-DVTLWGMTEPLVVTAKPVWVSFACGIAFAAIA-----GWLLGKLAF--RVR 119 Query: 152 DVYFSIVTQAIAAILSILIIGQQGLTGGVNGITDLKTLMGW----DIRTDHAKLVLYFVN 207 YF IVT + A ++ ++ + LT G + ++ L W + +KL Y++ Sbjct: 120 GAYFVIVTISFAQVMRMVSLNWVDLTEGPMALNNIPALTMWVPGEGVIDLASKLSTYWLV 179 Query: 208 AGLLFGCILFGRYVLSSKLGRLLVAMRDKEERVRFSGYDVASFKVFVFCAAAMFSAIGGA 267 + L ++ S++GR ++A+R+ E R G V + AA + G Sbjct: 180 LAVAVVSYLLVAAIVHSRIGRAMIALRENETLARSVGIRVTHYLGIATIFAAGIAGAAGG 239 Query: 268 MFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLGAVYGTLLVNFG---KTYFSETFPE 324 ++ V + P + +I MVI VGG+ +L G V G LL FG + PE Sbjct: 240 LYAHTVRIIDPDVFMFMFTIMMVIMVIVGGKGTLAGPVVGGLL--FGLLPEVLRGVVSPE 297 Query: 325 LWLFLMGGLFIAVVMYFPNGL 345 + + G L IAV+++ P G+ Sbjct: 298 IQWMIYGVLMIAVLVFMPKGV 318 >gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 404 Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 30/290 (10%) Query: 45 LSYAFVAVGLVLCWGYGGILSLGQGVFFGLGGYCMAMFLKLEASDPISTKIQSTPGIPDF 104 L Y +A+GL + G+ G+L LG F+ +G Y A+ + + + + + P I + Sbjct: 47 LLYIMLALGLNVVVGFAGLLDLGYIAFYAIGAYLTALLASPQFAVVLESFVNQYPAIGET 106 Query: 105 MDWNQITALPAMWEPFHSFAFTIFAVLAVPTVLA----MLIGMAMFKRRVGDVYFSIVTQ 160 + W P + + + +++A++ + ++A L+G K R GD Y +IVT Sbjct: 107 LLW---VFGPEIAQ--NGIHLSLWAIVPLAALVAGFFGALLGAPTLKLR-GD-YLAIVTL 159 Query: 161 AIAAILSILIIGQQG---LTGGVNGITDLKTLMGWDIRTD-----HAKLVL--------- 203 I+ I + G +T G GI + + + + + A +++ Sbjct: 160 GFGEIIRIFMNNLNGPVNITNGPQGINMIDPIRIFGVSLNGEAGSRATVMIGDYAMPSVN 219 Query: 204 --YFVNAGLLFGCILFGRYVLSSKLGRLLVAMRDKEERVRFSGYDVASFKVFVFCAAAMF 261 YF+ L I + +S+LGR VA+R+ E + G + + K+ F A F Sbjct: 220 AYYFLFLFLCIAIIFISVRLQNSRLGRAFVAIREDEIAAKAMGINTRNVKLLAFAMGASF 279 Query: 262 SAIGGAMFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLGAVYGTLLV 311 I GAMF GF+SP + SI ++ +GG + G V G +++ Sbjct: 280 GGIAGAMFASFQGFVSPESFSLTESIAVLAMVVLGGMGHIPGVVLGGIIL 329 >gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino acid transport system permease component [Janthinobacterium sp. Marseille] Length = 424 Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 83/340 (24%), Positives = 139/340 (40%), Gaps = 34/340 (10%) Query: 25 LLVVFPLTMDMF-RLNLVGKYLSYAFVAVGLVLCWGYGGILSLGQGVFFGLGGYCMAMFL 83 LLVV PL L+L+ + ++ A+ + G GG+LS G V+ GLG +C + Sbjct: 21 LLVVAPLIFTQSASLSLLCQMGTFIIFALSYNMLLGQGGMLSFGHAVYSGLGAFCAIHAI 80 Query: 84 KLEASDPISTKIQSTPGIPDFMDWNQITALPAMWEPFHSFAFTIFAVLAVPTVLAMLIGM 143 L A+ + IP IT +P + F +F + Sbjct: 81 NLVAAGNLH--------IP-------ITLIPLVGGVAGLFFGALFGYVT----------- 114 Query: 144 AMFKRRVGDVYFSIVTQAIAAILSILIIGQQGLTGGVNGITDLKTLMGWDIRTDHAKLVL 203 R+ G + I + + + ++ G TD + T ++ + Sbjct: 115 ---TRKSGTTFAMITLGIVELVFACSLMFPGFFGGEGGIFTDRVVGEAFFGITYGPQIQV 171 Query: 204 YFVNAGLLFGCILFGRYVLSSKLGRLLVAMRDKEERVRFSGYDVASFKVFVFCAAAMFSA 263 Y++ AG L + + LGR++ A+RD ER F GYD + +A F+ Sbjct: 172 YYLIAGWLLLSTVAMYAFTQTPLGRIINAVRDNPERAEFVGYDPQWVRYLTLMLSAFFAG 231 Query: 264 IGGAMFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLGAVYGTLLVNFGKTYFSETFP 323 I GA+ + +S V + S +++F +GG G + G ++ F S + Sbjct: 232 ISGALTAINFEIVSAENVSALRSGMILLFTFIGGTAFFFGPILGAIVGVFLTVVLSN-YT 290 Query: 324 ELWLFLMGGLFIAVVMYFPNGLAGLWQTQGKRLM--GKLR 361 W +G F+ +VM P G+AGL Q RL+ GKL+ Sbjct: 291 NAWQLYLGVFFVLIVMLAPGGIAGL-LMQFMRLLQYGKLQ 329 >gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 343 Score = 55.5 bits (132), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 71/329 (21%), Positives = 139/329 (42%), Gaps = 42/329 (12%) Query: 25 LLVVFPLTMDMFRLNLVGKYLSYAFVAVGLVLCWGYGGILSLGQGVFFGLGGYCMAMFLK 84 LL + PL + + + L+ + +YA + +G L +GYGG+LS G A+F+ Sbjct: 39 LLAIAPLFVSQYYMTLLIPFFAYAVILLGFNLLFGYGGLLSFGH-----------ALFIA 87 Query: 85 LEASDPISTKIQSTPGIPDFMDWNQITALPAMWEPFHSFAFTIFAVLAVPTVLAMLIGMA 144 + A + ++ G+ F ++ L A+ F ++++P +A Sbjct: 88 IGAYAAAAMVAKT--GMISF----EMMLLTAVVASF---------IISIP--------IA 124 Query: 145 MFKRRVGDVYFSIVTQAIAAILSILIIGQQGLTGGVNGITDLK-TLMGWDIRTDHAKLVL 203 R ++F ++T + + + +TGG +G+ + +L G ++ L Sbjct: 125 WLASRFTGIFFGMLTLSFGMLFHSFLNKFYYITGGDSGMRVPRPSLFGMELDQFDKTAFL 184 Query: 204 -----YFVNAGLLFGCILFGRYVLSSKLGRLLVAMRDKEERVRFSGYDVASFKVFVFCAA 258 Y+ +L + R ++ S G L+A RD + + G + S + F + Sbjct: 185 GGPFYYYCLVMVLLLTWVMWR-IVRSPYGIHLMASRDNAIKALYLGVKIRSVRAIAFVVS 243 Query: 259 AMFSAIGGAMFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLGAVYGTLLVNFGKTYF 318 A++++IGG + + G P S +V A +GG LG V G + + Sbjct: 244 AVYASIGGVILGVNTGLADPELAYWTHSGHLVFMAVLGGYQEFLGPVLGAFVFILLQDEL 303 Query: 319 SETFPELWLFLMGGLFIAVVMYFPNGLAG 347 S + + W F +G + +V+ P G+ G Sbjct: 304 S-SLTQYWRFFLGAILAILVVVLPGGIMG 331 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.143 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 855,126 Number of extensions: 35106 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 6 Length of query: 401 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 316 Effective length of database: 906,776 Effective search space: 286541216 Effective search space used: 286541216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)