BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2675.p (255 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC t... 272 2e-74 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 157 7e-40 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 149 2e-37 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 139 3e-34 gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino a... 118 5e-28 >gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC transporter, ATP-binding protein [Janthinobacterium sp. Marseille] Length = 288 Score = 272 bits (695), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 135/254 (53%), Positives = 186/254 (73%), Gaps = 3/254 (1%) Query: 4 NPIGFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICG 63 P G ++ +L +ED+TVSFDGFKA++KLNL + E+R +IGPNGAGKTT++D+I G Sbjct: 34 KPEGLDTAHGVILYLEDITVSFDGFKAINKLNLDISVGELRCIIGPNGAGKTTMMDVITG 93 Query: 64 KTRATSGSIKFNNH-ELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVF 122 KTR TSG+ F +LTK++E+ I G+GRKFQ P+++E +VFENLE++ ++V Sbjct: 94 KTRPTSGTAFFGQSIDLTKLTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVK 153 Query: 123 GALTFKRSPDVVARVEAVAADIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDE 182 L + + + + ++E + I L Q H A LLSHGQKQWLEIGMLLMQEP+L++LDE Sbjct: 154 TTLFARLNSEQIGKIEEILKLIRLNGQEHRIAGLLSHGQKQWLEIGMLLMQEPQLILLDE 213 Query: 183 PVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAH--KVTVLHQGKILAEGSME 240 PVAGMS +E +TAELL + S++V+EHDM FV+ IA KVTVLH+G +LAEGSM+ Sbjct: 214 PVAGMSDAETARTAELLNELRGKHSIMVVEHDMGFVEEIAQGDKVTVLHEGSVLAEGSMQ 273 Query: 241 KVQSDPKVIDVYLG 254 +VQ+D +VI+VYLG Sbjct: 274 QVQADERVIEVYLG 287 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 157 bits (397), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 91/254 (35%), Positives = 153/254 (60%), Gaps = 8/254 (3%) Query: 9 ESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRAT 68 +++ L ++ +T+ G AVD + V ++ +IGPNGAGKTT ++I G + T Sbjct: 3 QTNTTAALELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPT 62 Query: 69 SGSIKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFP-RGR-KVFGAL- 125 SG +K H++T M+ I ++G+ R FQ SI+ +V EN+ + +G+ V AL Sbjct: 63 SGRVKLFGHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQALL 122 Query: 126 ---TFKR-SPDVVARVEAVAADIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLD 181 F+R D+ + + A + L + +T A LS+G+++ L +G+ L +P++L+LD Sbjct: 123 RTQKFRREEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLD 182 Query: 182 EPVAGMSVSEREKTAELLGRISQ-GRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSME 240 EP AG++ SE E E++ RI Q G +V+++EHDM V SI+ + VL+ G+++A GS Sbjct: 183 EPAAGLNPSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPS 242 Query: 241 KVQSDPKVIDVYLG 254 ++Q+DP+VI YLG Sbjct: 243 EIQNDPEVIRAYLG 256 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 82/217 (37%), Positives = 131/217 (60%), Gaps = 14/217 (6%) Query: 46 VIGPNGAGKTTVLDLICGKTRATSGSIKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENL 105 +IGPNGAGK+T+ +LI G+ +SG I N + + I R G+ R FQ +I+ L Sbjct: 36 LIGPNGAGKSTLFNLISGRFPLSSGDILLNGSSIAGQKPYQINRRGLSRSFQITNIFHRL 95 Query: 106 SVFENLEMSFPRGRKVFGALTFKRS--------PDVVARVEAVAADIFLEEQLHTQADLL 157 SVFENL + V +L ++ S DV R E V +I L ++ + +ADLL Sbjct: 96 SVFENLRCA------VLWSLGYRYSFWQRLNGLQDVNQRAEQVMEEIGLHKRRNVEADLL 149 Query: 158 SHGQKQWLEIGMLLMQEPELLMLDEPVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDF 217 S+ +++ LEIG+ + ++L+LDEP AGMS SE + EL+ +IS G++++++EHDMD Sbjct: 150 SYAEQRALEIGITIAGGAQVLLLDEPTAGMSRSESDAAVELIRKISAGKTLLMVEHDMDV 209 Query: 218 VKSIAHKVTVLHQGKILAEGSMEKVQSDPKVIDVYLG 254 V +A ++ VL G+I+A + + ++++P V YLG Sbjct: 210 VFGLADRIAVLVYGEIIACDTPDNIRNNPLVQQAYLG 246 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 139 bits (349), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 140/252 (55%), Gaps = 16/252 (6%) Query: 15 VLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRATSGSIKF 74 +L I ++ F G +A+ +N+ + + ++ +IGPNGAGKTT ++I G +A +GS + Sbjct: 6 ILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFEL 65 Query: 75 NNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKV------FGALTFK 128 + + H + + G+ R FQ ++ ++ EN+ + GR V FGA+ Sbjct: 66 AGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMI----GRHVRTHQGLFGAVFHH 121 Query: 129 RS-----PDVVARVEAVAADIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDEP 183 ++ ++ R + + + + A LS+G ++ LEI L +P+LL LDEP Sbjct: 122 KAARREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEP 181 Query: 184 VAGMSVSEREKTAELLGRI-SQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMEKV 242 AGM+ +E+ ELL +I ++G+++++IEHD+ + + ++TVL GK +AEG V Sbjct: 182 AAGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADV 241 Query: 243 QSDPKVIDVYLG 254 Q DP VI+ YLG Sbjct: 242 QKDPAVIEAYLG 253 >gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino acid transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 274 Score = 118 bits (295), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 139/256 (54%), Gaps = 20/256 (7%) Query: 15 VLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRATSGSIKF 74 ++ + DLT+ F G A+D+LN+ + EV ++GPNG+GKTT +++ G +ATSGSI + Sbjct: 20 LVGVTDLTMRFGGLTALDQLNMQINEGEVLGLLGPNGSGKTTFFNVLTGLYKATSGSIIY 79 Query: 75 NNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENL------EMSFPRGRKVFGALTFK 128 E+ + I R GV R FQ + L+VF+N+ M+ +F F+ Sbjct: 80 KGQEVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMNHGLFFNLFQRKAFR 139 Query: 129 RSPDV-VARVEAVAADIF---LEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPV 184 D V +VEA+ +IF L ++ + ++ +E+ L+ +P LL+LDEP Sbjct: 140 AEYDAYVGKVEAL-LNIFSPPLVARMFEPVGTFTMIDRRRIEVCRALLSQPRLLLLDEPS 198 Query: 185 AGMSVSEREKTAELLGRISQGR------SVVVIEHDMDFVKSIAHKVTVLHQGKILAEGS 238 AGM+ E E L+ I Q R ++V+IEH+M+ ++ I + V + GK +AEG+ Sbjct: 199 AGMTHDETEA---LMDDILQVRGKLENLTIVLIEHEMNVIERITDRCIVFNYGKKIAEGT 255 Query: 239 MEKVQSDPKVIDVYLG 254 ++ +DP V YLG Sbjct: 256 YAEITADPNVQTAYLG 271 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 502,975 Number of extensions: 17648 Number of successful extensions: 226 Number of sequences better than 1.0e-08: 51 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 54 Length of query: 255 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 174 Effective length of database: 921,564 Effective search space: 160352136 Effective search space used: 160352136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)