BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2674.p (229 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 221 2e-59 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 148 2e-37 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 139 2e-34 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 134 4e-33 gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPa... 128 4e-31 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 221 bits (564), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 111/233 (47%), Positives = 160/233 (68%), Gaps = 5/233 (2%) Query: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 M +V+QL YG + + + LSV K + ++++GRNG+GKTTL K LMG+LP+ G++S+ Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 61 DGVELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPAAARGK----VPDELYSL 116 DG ++ L+ HQR G+AYVPQGR IF+ +TV EN+ G+ A GK + E+Y L Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGM-ATKSGKKASVIKGEVYEL 119 Query: 117 FPVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEI 176 FPVL +M R+GG+LSGGQQQQLAIARAL P++++LDEPTEGIQPSIIKDI R + + Sbjct: 120 FPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLL 179 Query: 177 RKIRALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRANVDAPTISKYLSV 229 R+ + I++ EQ F E+AD F+V+ +G V ++ +D + K+L+V Sbjct: 180 RERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMDDDNVKKHLAV 232 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 148 bits (374), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 144/231 (62%), Gaps = 5/231 (2%) Query: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 + ++ L + YG+S V+H +D+++ EIV+++GRNG G++T K MG++ G +I Sbjct: 4 LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAATG-TIRF 62 Query: 61 DGVELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPAAARGKVPDELYSLFPVL 120 G E+ GL +++ +G+ YV + R IF ++V +N+ G A +R D++Y LFP L Sbjct: 63 KGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGAQAKSRWSA-DDMYRLFPRL 121 Query: 121 YDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIRKIR 180 + + + G LSGG+QQ LA+ R L +P ++++DEPTEG+ P ++ +A L+E+ + R Sbjct: 122 QERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFLQELVQ-R 180 Query: 181 ALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRANV--DAPTISKYLSV 229 +++++ EQ L+ L+I+ R V+ G+ V+E + ++ DA ++L V Sbjct: 181 GVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQEWLGV 231 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 139 bits (350), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 136/233 (58%), Gaps = 7/233 (3%) Query: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 M K+ ++ YG + I+ + L V + EIV ++G NG GK+T + + G+ PL GSI + Sbjct: 16 MLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRM 75 Query: 61 DGVELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTG-LPAAARGKVPDE---LYSL 116 +G + G + ++ G+++ P+GR +F +TV EN++ G + KV D+ ++ Sbjct: 76 NGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKVRDDMERMFDK 135 Query: 117 FPVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEI 176 FP L + + G LSGG+QQ LAIARAL + PR+++ DEP+ G+ P+I++ I ++EI Sbjct: 136 FPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSLIREI 195 Query: 177 RKIRALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRANVDA-PTISK-YL 227 R T+++ EQ L + DR +++ G V + + A + A P I + YL Sbjct: 196 RS-EGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYL 247 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 134 bits (338), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 125/215 (58%), Gaps = 5/215 (2%) Query: 4 VSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISIDGV 63 V L +GY + V+HDV + VA +I ++G NG GK+TL ++++G+ P R G I G Sbjct: 6 VKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWGGK 65 Query: 64 ELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTG-LPAAARGKVPDEL---YSLFPV 119 L G ++H + G++ +P+GR +F MTV EN+ G ++ V D L Y +FP Sbjct: 66 NLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAFLESSSTVVRDRLARVYEIFPR 125 Query: 120 LYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIRKI 179 L + + G +SGG+Q ++I R L P++L++DEP+ G+ P +K+ + +K+I + Sbjct: 126 LKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKVIKQINAL 185 Query: 180 RALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDT 214 +T+++ EQ TL I+ V+ +GR + + T Sbjct: 186 -GITVLLVEQNARQTLAISHYGYVLSQGRVMAQGT 219 >gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 128 bits (321), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 127/213 (59%), Gaps = 10/213 (4%) Query: 4 VSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISIDGV 63 V+ L YG +V+ DV L V E++ ++G NG GKTT F ++G++P G I +DGV Sbjct: 7 VNGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELDGV 66 Query: 64 ELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGL-------PAAARGKVPDELYSL 116 ++ L H+R + G++Y+PQ +F ++V +NI+ L A ++ L +L Sbjct: 67 DISRLPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALNSAQLEQRLDTL 126 Query: 117 FPVLY--DMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLK 174 L +R + +LSGG+++++ IARALATNPR +LLDEP G+ P + +I R ++ Sbjct: 127 LADLQIEKLRENQAMSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRIVR 186 Query: 175 EIRKIRALTIVVSEQVLSFTLEIADRFLVIDKG 207 +++ R + +++++ + TL I DR +I++G Sbjct: 187 FLKE-RGIGVLITDHNVRETLGICDRAYIINQG 218 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 453,513 Number of extensions: 16970 Number of successful extensions: 241 Number of sequences better than 1.0e-08: 59 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 63 Length of query: 229 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 149 Effective length of database: 925,261 Effective search space: 137863889 Effective search space used: 137863889 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)