BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2669.p
         (290 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981680|ref|YP_001352254.1| signal transduction protein [Ja...   100   7e-23
gi|152982002|ref|YP_001354993.1| signal transduction protein [Ja...    55   7e-09

>gi|152981680|ref|YP_001352254.1| signal transduction protein
           [Janthinobacterium sp. Marseille]
          Length = 291

 Score =  100 bits (250), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 17/232 (7%)

Query: 1   MELKSLVDQPGKLPTVPKVVQQLIASFNAEDVSSHDIAQQIAADPALTAKVLRLANSAFF 60
           +    ++ Q   LP +P +VQ L+ +   ++   + I +++A D AL+AK L+ ANS+F+
Sbjct: 13  LHFNQVIAQIRDLPALPAIVQDLMKTIGPDETDINVITRKVAMDQALSAKTLQFANSSFY 72

Query: 61  HASRTIGTVDDALRMLGFIMVRNLVLGNGMVAAF--KNTRGMDLHQFWRHTLYTAVAARW 118
                + T+  A+ ++G   VR++V    +   F   N  G D    WRH++ TAV AR 
Sbjct: 73  GLQSKVTTIQQAITLIGVNAVRHVVTATALTGYFPQNNCAGFDFFALWRHSVATAVCARV 132

Query: 119 LAMHAGTSGEDNGDAVFTVGMMHGIGQLQL-----HAVAATAVAPLDKQCNVLDADRAQR 173
           LA H       N D  FT G++H IG+L L     +   A      +  C+ L+A     
Sbjct: 133 LARHLHV----NQDYAFTAGLLHDIGRLVLVTYFRNEYEAVIAYRQEHDCHWLEA----- 183

Query: 174 EKEAWGFHYADVSAELATIWHFPDAMANALRSIPDPLAAGRLERSAGWVHLG 225
           E+E  G  +      LA  W+F D + +A+    +P    ++   A  VH+ 
Sbjct: 184 EQEVLGVDHVMAGEALAAHWNFSDTIRHAIAGHHNP-EQQKVRSLASIVHIA 234


>gi|152982002|ref|YP_001354993.1| signal transduction protein
           [Janthinobacterium sp. Marseille]
          Length = 454

 Score = 54.7 bits (130), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 110/253 (43%), Gaps = 25/253 (9%)

Query: 37  IAQQIAADPALTAKVLRLANSAFFHA-SRTIGTVDDALRMLGFIMVRNLVLG----NGMV 91
           + + + +DP LT +VLRLANSA + A  ++I TV  A+ +LG   + +L LG    +G+ 
Sbjct: 1   MTRTVLSDPTLTQRVLRLANSAMYSAFGQSINTVSKAVIVLGTETIGHLALGLKLIDGLS 60

Query: 92  AAFKNTRGMDLHQFWRHTLYTAVAARWLAMH-AGTSGEDNGDAVFTVGMMHGIGQLQLHA 150
           AA   +         R  +  AV A  +A   A ++   + + V    ++H +G+L +  
Sbjct: 61  AASLGSSDT------RSEMERAVMAGQIARQVASSTTRRDTEEVVVCSILHSLGRLMVSF 114

Query: 151 VAATAVAPLDKQCNVLDADRAQREKEAWGFHYADVSAELATIWHFPDAMANALRSIPDPL 210
                 A + ++    +    +   +  G    ++   +   W  P  +  +L+ +P  +
Sbjct: 115 YLPEQWAEVQERATSNNISENEAAHDVLGLELDEIGRLIGKRWGLPSGLVASLKEMPPRI 174

Query: 211 AAGR----LERSAGWVHLGAWAARVEVLQLDDAAAQASYPLA-----LAKKLGVDPAWRP 261
            A      LE S     +   + R   +  +D  A A   LA      A+ LG+D A   
Sbjct: 175 DADASHEPLEHSEWLAAVSTMSTRCAGVLCEDDTASAEGDLAEIAENYAEMLGLDSA--- 231

Query: 262 LLVKHAADKAERA 274
            +V  A D A++A
Sbjct: 232 -VVLSAVDAAQKA 243


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 665,242
Number of extensions: 25488
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 290
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 208
Effective length of database: 917,867
Effective search space: 190916336
Effective search space used: 190916336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)