BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2666.p
         (508 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacter...   226   3e-60

>gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score =  226 bits (575), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 163/495 (32%), Positives = 235/495 (47%), Gaps = 15/495 (3%)

Query: 7   ILAIDAGTSGTRAAVVTANGQVSCLHHLPLPIHSPQPGVVEQDAALIWQHTLAVCRATLQ 66
           ILAID GT+ +RA +    GQ+  +     P   P+PG VE DA  IW   LAV R  L+
Sbjct: 5   ILAIDQGTTSSRAILFNHEGQIHGVAQQEYPQIFPEPGWVEHDANAIWNSQLAVARQVLK 64

Query: 67  QARQKRLQVRAIGLCNQRASAVLWDTVSGQPLAPALVWQDSRHAAQLAKLAVHWERRL-R 125
           + +     + AIG+ NQR + V+WD  +GQP+A A+VWQD R AA   +L    +  L +
Sbjct: 65  ENKLSATDIAAIGITNQRETTVIWDRKTGQPIANAIVWQDRRTAAYCDQLRAEGKADLFQ 124

Query: 126 PRLGRPLGPRSPYLWAAHLLRSNPAVAQAWRQRRLGFGSIDTWLLWQLSAGRLLATSATN 185
            + G  L           LL   P       +  L FG+ID+WL+++LS   L  T ++N
Sbjct: 125 QKTGLVLDSYFSGTKVKWLLDHIPDARARAERGELAFGTIDSWLVYKLSGAHL--TDSSN 182

Query: 186 ATACNAYCLDEHAYALDWLQALDFPLELLPPLYQDADDYGMSETSVLGAALPIRACAGDQ 245
           A+    + +    +  + L   D P  LLP +   +     + T + GA + I   AGDQ
Sbjct: 183 ASRTLLFNIHTLQWDEELLAIFDIPASLLPAVVASSGIASHTHTELFGAPIAIAGIAGDQ 242

Query: 246 LAGAIGLGCLAAGQALCVHGTGSFINLLVGTRAPLATGISEQTGSVVVTARRQQGV---- 301
            A   G  C   G A   +GTG F+ L  GT A     IS    +++ T     G+    
Sbjct: 243 QAATFGQACHKPGMAKNTYGTGCFMLLNTGTHA-----ISSHN-NLLTTIGWTLGIGKAA 296

Query: 302 -SHFALESFCATTGAVLTWACQRQRWFPHARALLSLAASVPHAGGVSFVPALAGIQAPQR 360
            +++ LE      GA++ W          +  + +LA SVP  GGV FVPA +G+ AP  
Sbjct: 297 QTNYMLEGGVFMGGAIVQWLRDGLGIIQRSADVEALATSVPDNGGVVFVPAFSGLGAPYW 356

Query: 361 HSGARAALQGLSLASSRAEIAHALVEGIAQAVAACVHANAEVAGLPVTQLMSGGGLSASD 420
            S AR  + G++  S++A IA A +E IA      + A  + A     +L   GG S +D
Sbjct: 357 DSYARGTILGMTRGSNKAHIARAALESIAYQSVDLLDAMQKDAQSSSQELRVDGGASRND 416

Query: 421 LLLQLQADLTGVPTYRTHQAAHASLRGIAYLAGSQGLLWDDLPQACARTRLRAVFEPRLD 480
           LL+Q QAD+  VP  R       +L G AYLAG     W    +  A+ ++   FEP + 
Sbjct: 417 LLMQFQADILNVPVIRPVVTETTAL-GAAYLAGLAVSFWQSAEEITAQWKMDKRFEPAMS 475

Query: 481 AAARTARRAPWQARV 495
           A  R  R   W   V
Sbjct: 476 ADEREQRLHTWHRAV 490


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,003,916
Number of extensions: 34587
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 421
Effective length of database: 899,382
Effective search space: 378639822
Effective search space used: 378639822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)