BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2665.p
         (505 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982698|ref|YP_001352731.1| major facilitator transporter [...    65   9e-12

>gi|152982698|ref|YP_001352731.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 460

 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 135/311 (43%), Gaps = 30/311 (9%)

Query: 59  FLEALSHSALSVGLPAMIGQLGLGPPEVAWLASSAAASALLANPLGGWLADRWGRRRPLL 118
           F +++    ++  L ++  +  L   +   LASS+     L   + G LAD++GR+    
Sbjct: 38  FFDSMDLGIMTFVLGSIKAEFALTTTQAGLLASSSFLGMFLGAAIAGMLADKFGRKPVFQ 97

Query: 119 LAKLLALGGAVLVACAPDFASILMGRLLAGIAFGLDFAVAMAMLAEITPQHLRSR-LSLW 177
            + +    G++    A D   +++ R++ G   G++F + ++M++EI P   R + +++ 
Sbjct: 98  WSMIFWGAGSLACGFATDVTWLMVFRVVLGFGMGMEFPIGLSMVSEIVPAKSRGKYVAIL 157

Query: 178 QALWYLAVCGNLLLVLLVEPWDVGQSLWRYPLAATALAAFLMLNLQLLFLVESPCWLARR 237
           +  W L      +L  L  P  +G   WR    A ++ A  +  ++  ++ ESP WL   
Sbjct: 158 EGFWPLGFIAAGILAYLTLPL-IG---WRGIFIALSIPAVFVFIVR-RYVPESPRWLEEV 212

Query: 238 RRWQECAEALSRLYDAPYFQLLERHPAQHNGGL---TKAP-----------HASLRQLLH 283
            R  E     ++         +E++  + NGG    T AP            A   +L H
Sbjct: 213 GRDAEADAVTTK---------IEKNVIKANGGKPLPTPAPPINEMPKKQDKRALFAELWH 263

Query: 284 QPYLLRLILAATVQVVQAVQYFAIGWYLPILGLELFGEDARQAAWGALVFNLCGIAGGLL 343
             Y  R ++   +     + Y+ +  +L  L L+  G +  ++    +  +L GI G + 
Sbjct: 264 GVYAKRTVMLWALWFFALLGYYGLTTWLGAL-LQQAGYEVTKSVMYTVYISLAGIPGFIF 322

Query: 344 APWLARRLGLR 354
           + WL  + G +
Sbjct: 323 SAWLLEKWGRK 333


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 934,234
Number of extensions: 29823
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 3
Length of query: 505
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 418
Effective length of database: 899,382
Effective search space: 375941676
Effective search space used: 375941676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)