BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2661.p (286 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983122|ref|YP_001354734.1| LysR family transcriptional reg... 113 1e-26 gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 99 4e-22 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 92 5e-20 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 82 3e-17 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 76 2e-15 >gi|152983122|ref|YP_001354734.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 113 bits (282), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/267 (31%), Positives = 130/267 (48%), Gaps = 15/267 (5%) Query: 5 QLRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSETAQRL 64 +L FL VA+H GF AA G+SQ TLT ++ LER N L R L+ Q L Sbjct: 6 KLETFLTVAKHGGFRGAAMHRGLSQSTLTQHIKQLERSLNAVLIDRSNAVSKLTTEGQAL 65 Query: 65 LPIAQNIAELELDALNLLVNSGALHVGHLRIGAVGPFHVIEMVDAYRARYPR---VELSI 121 LP AQ + ++ A +L S L IGA I ++ Y + R V+L I Sbjct: 66 LPYAQMLIDISKKASDLFRRS------SLTIGASSNVG-IYLLQPYLKEFQRRSGVKLDI 118 Query: 122 KLGNSAQTLADLENYVTDVAVLASFTDDARFHALPYADHAVVLFVHRSHPFYQRDAVALA 181 + ++ L+ DVAV+ + + F A + +VL V SHP+ R + L Sbjct: 119 VIADNTSIADKLQRLEIDVAVMEWWDSRSGFTASIWRSEELVLIVPTSHPWAGRSTIQLE 178 Query: 182 ELDQQPMLMREQGSTTRLALEKAMQQAGVSPRIVMEIGSREALREAVARGLGLGTVSEAE 241 ELD ++ E+G+ T +E+ + + + M++GS EA++ AV GLG+ V A Sbjct: 179 ELDGIELIGGEKGTGTGRIIERMLGARDLRINVAMQLGSTEAVKHAVKAGLGVSVVL-AG 237 Query: 242 FIPDE----RFRMVRIEGDPVSTHTYV 264 + DE +F ++RI+GD + YV Sbjct: 238 AVTDEVLSRQFNVLRIDGDTLQKDIYV 264 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 98.6 bits (244), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 131/273 (47%), Gaps = 7/273 (2%) Query: 5 QLRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSETAQRL 64 QL+ F VARH FS AA L ++QP ++TQV+ LE + LF + G+++ L+ L Sbjct: 8 QLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGSEL 67 Query: 65 LPIAQNIAELELDALNLLVNSGALHVGHLRIGAV--GPFHVIEMVDAYRARYPRVELSIK 122 L ++ I + +A + + + G L + + G + ++ + + V L++ Sbjct: 68 LHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVISAGDYFFPRLLVEFARSHQGVTLNLS 127 Query: 123 LGNSAQTLADLENYVTDVAVLASFTDDARFHALPYADHAVVLFVHRSHPFYQRDAVALAE 182 + N L + + +TD+A++ D +A H V+ HP + + ++ Sbjct: 128 VHNREGLLNQMTSNLTDIAIMVRPPTDMDTINEAFAPHPYVIVAAPDHPLVSQKNIPMSR 187 Query: 183 LDQQPMLMREQGSTTRLALEKAMQQAGVSPRIVMEIGSREALREAVARGLGLGTVSEAEF 242 L Q+P ++RE+GS T ++E + MEI S E +++AV G+G+ +S A Sbjct: 188 LMQEPFVVREKGSDTWHSMEDGFGDRINDINVAMEIRSTETIKQAVIAGMGVSFLS-AHT 246 Query: 243 IPDE----RFRMVRIEGDPVSTHTYVYCLAERR 271 I E ++ +EG PV + Y+ +R Sbjct: 247 ISLELQAGSLAVLDVEGFPVMLNWYIVHRKNKR 279 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 91.7 bits (226), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 135/278 (48%), Gaps = 15/278 (5%) Query: 5 QLRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSETAQRL 64 LR FLA A+ + F+ A+ +L ++QPTL+ Q++ +E E ++LF R GR V L+ TA L Sbjct: 5 HLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLT-TAGEL 63 Query: 65 LPIAQNIAELE----LDALNLLVNSGALHVGHLRIGAVGPFHVIEMVDAYRARYPRVELS 120 + A LE LDALN L N V + + G FH+ ++ + YP ++++ Sbjct: 64 FQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGIKIT 123 Query: 121 I---KLGNSAQTLADLENYVTDVAVLASFTDDARFHALPYADHAVVLFVHRSHPFYQRDA 177 + + G + L D + + VA S T+ L A+V+ H HP Sbjct: 124 VLRLRSGEIEERLLDGDLHF-GVAYAPSSTEQINVEPLFTVPLALVVGDH--HPLVGSAG 180 Query: 178 VALAELDQQPMLMREQGSTTRLALEKAMQQAGVSPRIVMEIGSREALREAVARGLGLGTV 237 + L EL++ ++M +R ++ + G++PRIVME+ + E + A R L T+ Sbjct: 181 ITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEPIL-ATVRHSSLATI 239 Query: 238 SEAEFIPDERFRMVRIEGDPVSTHTYVYCLAERREGRL 275 A + DE + ++ P THT L RR L Sbjct: 240 LSANLV-DEMPGLHQVPLTPTVTHT--VGLFTRRNSHL 274 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 82.0 bits (201), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 10/254 (3%) Query: 1 MTPSQLRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSET 60 MT ++L+ +AVAR + F AA A V+QPTL+ ++ LE E V LF R G + ++ Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 61 AQRLLPIAQNIAELELDALNLLVNSGALHVGHLRIG---AVGPFHVIEMVDAYRARYPRV 117 +++ A+ + E + + VG R+G + P+ + +V R P++ Sbjct: 77 GAQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQM 136 Query: 118 ELSIKLGNSAQTLADLENYVTDVAVLASFTDDARFHALPYADHAVVLFVHRSHPFYQRDA 177 L ++ + + L L D A++A D P D V+ V + H + RD+ Sbjct: 137 PLVLQENFTVKLLELLRQGELDAAIVALPFPDQGLLVQPVYDEPFVVAVPKHHKWANRDS 196 Query: 178 VALAELDQQPMLMREQGSTTR---LALEKAMQQAGVSPRIV---MEIGSREALREAVARG 231 V+ +L + ML+ G R L + M + S + E S E +R VA G Sbjct: 197 VSTDDLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVASG 256 Query: 232 LGLGTVSEAEFIPD 245 +G+ + +A IPD Sbjct: 257 IGITVLPQAS-IPD 269 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 75.9 bits (185), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 22/247 (8%) Query: 6 LRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSETAQRLL 65 LR F+ VA + AA+ +G+ QP L+ Q+++LE+E V LF R R ++L+E+ Q LL Sbjct: 9 LRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTESGQALL 68 Query: 66 PIAQNIAELELDALNLLV---------NSGALHVGHLRIGAVGPFHVIEMVDAYRARYPR 116 A+ I L+ +N + SG L VG A+ PF + ++ A+R + P Sbjct: 69 IDARLI----LEQVNTTIEGVRRISLGESGRLAVGFTESAALHPF-IPAVIRAFRQKSPG 123 Query: 117 VELSIKLGNSAQTLADLENYVTDVAVLASFTDDA---RFHALPYADHAVVLFVHRSHPFY 173 V ++++ N+ + + DL + DVA + S A + + + V L + +H Sbjct: 124 VIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPI--THRLA 181 Query: 174 Q-RDAVALAELDQQPMLM--REQGSTTRLALEKAMQQAGVSPRIVMEIGSREALREAVAR 230 Q R ++ L L + ++ R G ++ A + AG SPR+V E + VA Sbjct: 182 QRRKSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLSLVAA 241 Query: 231 GLGLGTV 237 GLG+ V Sbjct: 242 GLGVSIV 248 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 609,040 Number of extensions: 23868 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 18 Length of query: 286 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 204 Effective length of database: 917,867 Effective search space: 187244868 Effective search space used: 187244868 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)