BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2657.p (508 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981433|ref|YP_001351770.1| methyl-accepting chemotaxis pro... 178 6e-46 gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis pro... 174 2e-44 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 171 1e-43 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 167 2e-42 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 165 6e-42 >gi|152981433|ref|YP_001351770.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 178 bits (452), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 161/517 (31%), Positives = 278/517 (53%), Gaps = 50/517 (9%) Query: 6 LLLAWRDMLGMAS---SNDKLRYVYEDRTMALVHIARVRDALYTNRDVMGRALMLANVPT 62 +LL +LG++S +ND L+ VYEDRT+AL + V L N+ + A + P Sbjct: 20 VLLVGTGILGLSSLSATNDALKTVYEDRTVALGELNTVITLLTINQ--LDLAASIYGDPN 77 Query: 63 APGPDGASAHEQIQQWLGRLKGLDASFEQAWQAYRATRLSPEEQAQAERFEQSWKTYLQE 122 P + I++ R K + ++F AY T+L+ EE+A A +F +K ++ + Sbjct: 78 LVLPK----MDAIEK---RTKTIASTF----GAYEQTQLTTEEKALAGKFSADYKKFVDK 126 Query: 123 RNQVIELIATTQ---LLQA----NQSWTQLTPRLASLATELGRLGQLQESLTHESYNAAL 175 ++ IA ++ +L+ N++ L + + T L + QLQE+ + A+ Sbjct: 127 --ALVPAIAASRGGNVLRVTEIVNETMEGLILPVRADVTSLIDI-QLQEA--KREFEASQ 181 Query: 176 EEYATLRRHNLQIAGLALAV--GFVIALWIICSLRRQLGGEPDYAAHIVRQIAEGNLGVS 233 + +R N+ IA + V +A W++ + R L A + R +A G+L Sbjct: 182 ARFTLVR--NISIAAIIFGVLIAAFMAFWLLRLIVRPL----REAVDVARSVAAGDLTQQ 235 Query: 234 VRLRRRDR-GSLLYAMHTMRERLTEIMHAVTLSTQALEHSSRQLNATAHDLAEASSEQAA 292 +++R + G LL A+ M + L + + AV T+ + +S ++ + DL+ + QA Sbjct: 236 IQVRSSNETGQLLQAIKDMNDSLAQTVSAVRHGTETITLASGEIASGNADLSSRTEAQAG 295 Query: 293 AVEEVHSAITNMSRAIQQTGEHARRTDQIAVAAAADADKSGAAVQTTVAAM-------RG 345 ++EE S++ ++ ++Q ++AR+ +Q+A +A+ A K G V V M R Sbjct: 296 SLEETASSMEELTSTVRQNADNARQANQLAASASEVAVKGGVVVAEVVQTMGSIQDSSRK 355 Query: 346 IARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQGSAHEISVI 405 I +GVID IA+QTN+LALNAA+EAARAGE GRGF+VVAAE+R LA+RS +A EI V+ Sbjct: 356 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRNLAQRSAAAAKEIKVL 415 Query: 406 AQQSVEMAEQTSQRL------VDGTLQGIRQASQQINQITLSSRMQEEGVQEIGSAVAQL 459 SV+ E S ++ +D + +R+ + + +IT +S+ Q G+++I A+ Q+ Sbjct: 416 IGDSVDKVEAGSNQVTQAGKTMDEIVSSVRRVTDIMAEITAASQEQTSGIEQINQAITQM 475 Query: 460 NDTTQRNAAASEELATTAEVVAERAHELSAQLAYFRL 496 ++ TQ+NAA E+ A A + ++A+ LS + F+L Sbjct: 476 DEMTQQNAALVEQAAAAAASLQQQANGLSQVVGVFKL 512 >gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 146/514 (28%), Positives = 266/514 (51%), Gaps = 39/514 (7%) Query: 13 MLGMASSNDKLRYVYEDRTMALVHIARVRDALYTNRDVMGRALMLANVPTAPGPDGASAH 72 + G+ S+N+ L+ VY ++ + I L+ R + R L+ S+ Sbjct: 30 VFGLQSTNNSLQDVYGNQLASSQAINTAITRLFQARSTIDRVLI------------KSSG 77 Query: 73 EQIQQWLGRLKGLDASFEQAWQAYRATRLSPEEQAQAERFEQSWKTYLQERNQVIELIAT 132 + + R L + AW+ Y A ++ +E+ A+ + TYL+E + LI Sbjct: 78 SKNAEIFARADTLRNESDAAWKQYYALPMNADEKKLADEVTANRDTYLREG--ALPLIKA 135 Query: 133 TQ--LLQANQ--SWTQLTPRLASLATELGRLGQLQESLTHESYNAALEEYATLRRHNLQI 188 Q L + + + TP + +L + Q SY ++ ++ R + Sbjct: 136 IQAGLFEEAELLMLEKATPLFIKMTQSAEKLQEFQMKAAAASYESSQSMFSLFRIAAIGG 195 Query: 189 AGLALAVGFVIALWIICSLRRQLGGEPDYAAHIVRQIAEGNLGVSVRLRRRDR-GSLLYA 247 L V + A ++I ++ + LG + H I+ G+L + ++ R+ G L+ Sbjct: 196 VLFGLLVVAIAAFFLIRAIMQPLG---EMLNHF-SAISAGDLTSRIEVKSRNEMGKLMGG 251 Query: 248 MHTMRERLTEIMHAVTLSTQALEHSSRQLNATAHDLAEASSEQAAAVEEVHSAITNMSRA 307 + M++ L E + V + A+ +++Q+ A DL+ + +QA+++EE S++ ++ Sbjct: 252 LQVMQKSLIETVFNVRQGSTAIGVATQQIAAGNLDLSSRTEQQASSLEETASSMEELTST 311 Query: 308 IQQTGEHARRTDQIAVAAAADADKSGAAVQTTVAAM-------RGIARQVGVIDDIAYQT 360 ++Q ++AR+ +Q+A +A+ A+K G V V M + I +GVID IA+QT Sbjct: 312 VKQNADNARQANQLAASASTVAEKGGVVVSQVVDTMEEINTSAKKIVDIIGVIDGIAFQT 371 Query: 361 NLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQGSAHEISVIAQQSVEMAEQTSQRL 420 N+LALNAA+EAARAGE GRGF+VVA+E+R LA+RS +A EI + SV+ E S+ + Sbjct: 372 NILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVEIGSKLV 431 Query: 421 VDG------TLQGIRQASQQINQITLSSRMQEEGVQEIGSAVAQLNDTTQRNAAASEELA 474 + + G++Q + +++IT +S+ Q G++++ A++Q++ TQ+NAA EE A Sbjct: 432 AEAGVTMKEVVHGVQQVTDIMSEITAASQEQSAGIEQVNQAISQMDQVTQQNAALVEEAA 491 Query: 475 TTAEVVAERAHELSAQLAYFRLQDDLPRAKAQPV 508 AE + E+A +L+ ++ F+L D + A A PV Sbjct: 492 AAAESLNEQAGKLAEAVSVFKL-DGV--AAAAPV 522 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 171 bits (433), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 204/355 (57%), Gaps = 18/355 (5%) Query: 156 LGRLGQLQESLTHESYNAALEEYATLRRHNLQIAGLALAVGFVIALWIICSLRRQLGGEP 215 L RL + Q +L H++ A E A + Q+ G+ + +I+ ++ R + Sbjct: 161 LDRLVEFQSNLMHKAGEDAHEVSANAQ----QLVGILSVIAVIISAFLGFLATRSITRPL 216 Query: 216 DYAAHIVRQIAEGNLGVSVRLRRRDR-GSLLYAMHTMRERLTEIMHAVTLSTQALEHSSR 274 A + R++A+G+L ++ + +D G LL A+ M L I+ V + T + +S Sbjct: 217 SQAVGLARKVADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASS 276 Query: 275 QLNATAHDLAEASSEQAAAVEEVHSAITNMSRAIQQTGEHARRTDQIAVAAAADADKSGA 334 Q+ DL+ + EQA+++EE S++ ++ ++Q ++AR+++Q+A+ A+ A + GA Sbjct: 277 QIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGA 336 Query: 335 AVQTTVAAM-------RGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAE 387 V V M I +GVID IA+QTN+LALNAA+EAARAGE GRGF+VVA+E Sbjct: 337 VVSQVVETMGSINDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 396 Query: 388 IRKLAERSQGSAHEISVIAQQSVEMAEQTSQRLVD-GT-----LQGIRQASQQINQITLS 441 +R LA+RS +A EI + SVE S+ + D GT ++ +R+ + + +IT + Sbjct: 397 VRNLAQRSASAAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAA 456 Query: 442 SRMQEEGVQEIGSAVAQLNDTTQRNAAASEELATTAEVVAERAHELSAQLAYFRL 496 S+ Q +G+++I AV Q++ TQ+NAA EE A AE + ++A+ LS ++ F+L Sbjct: 457 SQEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKL 511 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 167 bits (422), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 199/345 (57%), Gaps = 22/345 (6%) Query: 178 YATLRRHNLQIAGLALAVGFVIALWIIC-SLRRQLGGEPDYAAHIVRQIAEGNLGVSVRL 236 YA+ R + + +AL + +A W++ S+ R L DYA + R +A G+L ++ Sbjct: 187 YASGRTILITLGSIALILSAFLA-WLLSRSITRPL----DYAVSVARTVASGDLRNKIQS 241 Query: 237 RRRDR-GSLLYAMHTMRERLTEIMHAVTLSTQALEHSSRQLNATAHDLAEASSEQAAAVE 295 D G LL A+ M + L + + V + + +S Q+ A DL+ + EQA+++E Sbjct: 242 SSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASSLE 301 Query: 296 EVHSAITNMSRAIQQTGEHARRTDQIAVAAAADADKSGAAVQTTVAAM-------RGIAR 348 E S++ ++ ++Q ++AR+ +Q+AV+A+ A+K G V V M + I Sbjct: 302 ETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKIVD 361 Query: 349 QVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQGSAHEISVIAQQ 408 +GVID IA+QTN+LALNAA+EAARAGE GRGF+VVA+E+R LA+RS +A EI + Sbjct: 362 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGD 421 Query: 409 SVEMAEQTSQRL------VDGTLQGIRQASQQINQITLSSRMQEEGVQEIGSAVAQLNDT 462 SV+ E S+ + +D +Q ++ + +++I +S+ Q G++++ A+ Q++ Sbjct: 422 SVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQV 481 Query: 463 TQRNAAASEELATTAEVVAERAHELSAQLAYFRLQDDLPRAKAQP 507 TQ+NAA EE A AE + E+A +L+ ++ F+L D A A P Sbjct: 482 TQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKL--DSITAAAAP 524 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 165 bits (418), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 123/377 (32%), Positives = 204/377 (54%), Gaps = 21/377 (5%) Query: 106 QAQAERFEQSWKTYLQERNQVIELIATTQLLQANQSW-TQLTPRLASLATELGRLGQLQE 164 +A + F+++ Y+ +V +L+A +A Q ++ P L + + +L +Q+ Sbjct: 112 KALMQEFKEARGKYVASFGKVGKLVADNHRDEARQILLSETLPALDVVQGIVAQLTAVQK 171 Query: 165 SLTHESYNAALEEYATLRRHNLQIAGLALAVGFVIALWIICSLRRQLGGEPDYAAHIVRQ 224 + E A + + + LA G +A WI S+ + L A I + Sbjct: 172 KMVEERGATAAGHIDAAIQMMMVLGALAAVGGIALAYWITHSITKPL----HEAVKIAQT 227 Query: 225 IAEGNLGVSVRLRRRDR-GSLLYAMHTMRERLTEIMHAVTLSTQALEHSSRQLNATAHDL 283 +A G+L + + +D G LL A+ M L I+ V ST+A+ +S Q+ + DL Sbjct: 228 VAAGDLTSVIEAKYKDETGQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDL 287 Query: 284 AEASSEQAAAVEEVHSAITNMSRAIQQTGEHARRTDQIAVAAAADADKSGAAVQTTVAAM 343 + + EQA+++EE S++ ++ ++Q ++AR+ +Q+A+ A++ A K G V V M Sbjct: 288 SSRTEEQASSLEETASSMEELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTM 347 Query: 344 -------RGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQ 396 + IA +GVID IA+QTN+LALNAA+EAARAGE GRGF+VVA E+R LA+RS Sbjct: 348 GSINDSAKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSA 407 Query: 397 GSAHEISVIAQQSVEMAEQTSQRLVD---GTLQ----GIRQASQQINQITLSSRMQEEGV 449 +A EI + SV+ S RLVD T+Q +R+ + + +IT +S+ Q G+ Sbjct: 408 AAAKEIKTLIGDSVQKVNAGS-RLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGI 466 Query: 450 QEIGSAVAQLNDTTQRN 466 ++I AV Q++ TQ+N Sbjct: 467 EQINQAVIQMDSVTQQN 483 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.126 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 940,734 Number of extensions: 33070 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 21 Length of query: 508 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 421 Effective length of database: 899,382 Effective search space: 378639822 Effective search space used: 378639822 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)