BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2655.p (303 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 356 1e-99 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 176 2e-45 gi|152981603|ref|YP_001353709.1| LysR family transcriptional reg... 169 1e-43 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 158 5e-40 gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 156 1e-39 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 356 bits (913), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 182/303 (60%), Positives = 220/303 (72%), Gaps = 3/303 (0%) Query: 2 RSFDPVQLGSIELFCKAAELGSFTAAAEALGVTPASVSRSISRLETRLGVRLFARTTRQI 61 R+FD V LGSIELFC AAE GSFTAAA GVTPA+VSRSISRLE RLGVRLF RTTRQI Sbjct: 3 RNFDDVLLGSIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQI 62 Query: 62 RLTREGQLYHEQCRQALEQIAETERFLTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQA 121 RLT G++Y EQCR+AL Q+ + ER ++G Q P+GLLRISV TPY HYRLLPLLP F+ Sbjct: 63 RLTDGGRVYFEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQ 122 Query: 122 RYPQIEVEVSIANRVIDFVEEGYDLAIRLGIPQDSRLIAHPLEDATLGVFAAPAYLQRRG 181 RYP ++VEV I+NR IDF EE YDLAIR P DS LIA LE+A L + AAP+YL+R G Sbjct: 123 RYPDVQVEVHISNRNIDFAEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAG 182 Query: 182 TPHSVAELEQHDCIQFILPSTGRAMPWIFK---DAQGRDVDFHFKSRQRIHDDVLGCVNW 238 P ++ +L++H+CIQF LPSTGR +PW+F QG+ VD +DVLG V Sbjct: 183 KPKTLEDLQKHECIQFELPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVLGIVTL 242 Query: 239 AIAGGGLFQIYHFIAQAAVQRGELVEVLQAAGHRTRRFSILYPHNRHLSARVRAFVDFLI 298 A +G GL Q Y FI + ++ G LVE+L G +R F +LYPH RHLS+RVRAFVDFL+ Sbjct: 243 ARSGAGLVQTYRFIVEDDLREGRLVELLPQFGATSRPFILLYPHARHLSSRVRAFVDFLM 302 Query: 299 EAV 301 E + Sbjct: 303 EKL 305 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 176 bits (445), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 157/291 (53%), Gaps = 5/291 (1%) Query: 12 IELFCKAAELGSFTAAAEALGVTPASVSRSISRLETRLGVRLFARTTRQIRLTREGQLYH 71 +E F A LG+ +AAA AL +TP + ++ +++LE+RLGVRL RTTR I LT EG++Y Sbjct: 65 LEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGEIYL 124 Query: 72 EQCRQALEQIAETERFLTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQARYPQIEVEVS 131 + L ++ E E ++ P GLLR++ + + PL+ F RYPQ+EV+ Sbjct: 125 GYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQVEVQFE 184 Query: 132 IANRVIDFVEEGYDLAIRLGIPQDSRLIAHPLEDATLGVFAAPAYLQRRGTPHSVAELEQ 191 ++++ ID VE G+DLAIR G D+RL A L + A+P YL+R GTP ++A+L + Sbjct: 185 VSDKPIDLVENGFDLAIRFGTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQTLADLSR 244 Query: 192 HDCIQFILPSTGRAMPWIF-KDAQGRDVDFHFKSRQRIHDDVLGCVNWAIAGGGLFQIYH 250 H CI + A W F +D + + D VLG WA+ G+ Sbjct: 245 HRCITH-RQNDEAAATWRFTRDGRNEVIKVESALSSNDGDIVLG---WALDAHGILIRSE 300 Query: 251 FIAQAAVQRGELVEVLQAAGHRTRRFSILYPHNRHLSARVRAFVDFLIEAV 301 + V+ G L VL + + YP+ R+ S R RAF+DFLIE + Sbjct: 301 WDLAKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFIDFLIEHI 351 >gi|152981603|ref|YP_001353709.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 169 bits (429), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 106/289 (36%), Positives = 159/289 (55%), Gaps = 10/289 (3%) Query: 12 IELFCKAAELGSFTAAAEALGVTPASVSRSISRLETRLGVRLFARTTRQIRLTREGQLYH 71 +E+F + E SFT AAE L + A+V+ +++RLE RLG RL RTTR + T +G Y+ Sbjct: 7 MEIFVRIMERRSFTKAAEDLQLPRATVTNAMARLEERLGSRLLNRTTRLVTPTLDGDAYY 66 Query: 72 EQCRQALEQIAETERFLTGQQKVPSGLLRISV-GTPYAHYRLLPLLPRFQARYPQIEVEV 130 +C + L I E + + P GLLR+ V GT AH+ L+P LP F ARYP +E+ + Sbjct: 67 TRCVRLLTDIEEADGAF--RNTAPKGLLRVGVQGTVAAHF-LVPTLPAFFARYPGMELHM 123 Query: 131 SIANRVIDFVEEGYDLAIRLGIPQDSRLIAHPLEDATLGVFAAPAYLQRRGTPHSVAELE 190 ++R++D V EG D +R G PQDS LIA + A+PAYL R G P ++ +L Sbjct: 124 DESDRLVDLVREGIDCVLRGGTPQDSSLIARRIAMLEQVSCASPAYLARYGQPRNIEDLT 183 Query: 191 QHDCIQFILPSTGRAMPWIFKDAQGRDVDFHFKSRQRIHDDVL--GCVNWAIAGGGLFQI 248 +H + +I ++G+ P F GR + + + GC A+AG G+ Q+ Sbjct: 184 KHKAVNYISSASGKPFPLEFM-VNGRMQSIVLPTAISVTGTKVYTGC---ALAGLGIVQM 239 Query: 249 YHFIAQAAVQRGELVEVLQAAGHRTRRFSILYPHNRHLSARVRAFVDFL 297 + + +Q G L ++L S+LYP NR LSAR+R F ++L Sbjct: 240 PRYHIEQELQDGRLQQILPDTPPPGMPLSVLYPQNRQLSARIRVFSEWL 288 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 158 bits (399), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 157/292 (53%), Gaps = 7/292 (2%) Query: 8 QLGSIELFCKAAELGSFTAAAEALGVTPASVSRSISRLETRLGVRLFARTTRQIRLTREG 67 L + F + GS A A LGVTP +V++ ++ LE RLGVRL RTTR + +T EG Sbjct: 3 DLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTHEG 62 Query: 68 QLYHEQCRQALEQIAETERFLTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQARYPQIE 127 ++Y + + L +I E ER ++ + VP GLLRI+ + + P + F +YP+IE Sbjct: 63 EIYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPEIE 122 Query: 128 VEVSIANRVIDFVEEGYDLAIRLGIPQDSRLIAHPLEDATLGVFAAPAYLQRRGTPHSVA 187 V++ +++R + +++ +D+ IR+G D+R+IA + + AAPAY++R GTP Sbjct: 123 VQLQLSDRPANLIDQAFDIGIRIGEMPDARIIARKIAANRRLLCAAPAYIKRHGTPSVPR 182 Query: 188 ELEQHDCIQFILPSTGRAM-PWIFKDAQGRDVDFHFKSRQRI-HDDVLGCVNWAIAGGGL 245 +L++ CI +L A W + ++ K R + +D + WA+AG G+ Sbjct: 183 DLQKLQCI--VLRENDAAYGSWHLHKGKRQE---SIKVRGALSSNDGETTLAWALAGHGI 237 Query: 246 FQIYHFIAQAAVQRGELVEVLQAAGHRTRRFSILYPHNRHLSARVRAFVDFL 297 + A ++ G LVEVL +YP +LSA+V AFVDF+ Sbjct: 238 LMRSQWDVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFV 289 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 156 bits (395), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 155/293 (52%), Gaps = 5/293 (1%) Query: 9 LGSIELFCKAAELGSFTAAAEALGVTPASVSRSISRLETRLGVRLFARTTRQIRLTREGQ 68 + + F + GS AAA+ LGVTP SVS+ ++ +E+RL VRL RTTR+I LT EG+ Sbjct: 4 ISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTPEGE 63 Query: 69 LYHEQCRQALEQIAETERFLTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQARYPQIEV 128 +Y + + ++ E+ ++G GLL++S + + P L F YP++EV Sbjct: 64 IYLADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPEVEV 123 Query: 129 EVSIANRVIDFVEEGYDLAIRLGIPQDSRLIAHPLEDATLGVFAAPAYLQRRGTPHSVAE 188 ++ + +R ++ VE+G+D IR G D+RL A + D V A+PAYLQ+ GTP + Sbjct: 124 QLHLTDRPVNLVEQGFDADIRFGQIPDARLSARKIADNRRLVCASPAYLQKHGTPLVPRD 183 Query: 189 LEQHDCIQFILPSTGRAMPWIFKDAQGRDVDFHFKSRQRIHDDVLGC-VNWAIAGGGLFQ 247 L+QH+CI + S W F ++ K R + + C +WA+ G G+ Sbjct: 184 LQQHNCI-LLRESDEIYGSWHFSSGIKQET---VKVRGALSANDGECATSWALDGQGIVV 239 Query: 248 IYHFIAQAAVQRGELVEVLQAAGHRTRRFSILYPHNRHLSARVRAFVDFLIEA 300 + ++ G L VL+ I++P HLSA+ RA VDF+++A Sbjct: 240 RSEWDVAPYLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDFMLQA 292 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 670,690 Number of extensions: 27544 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 35 Length of query: 303 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 220 Effective length of database: 914,170 Effective search space: 201117400 Effective search space used: 201117400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)