BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2648.p
         (241 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981742|ref|YP_001354271.1| biopolymer transport protein Ex...    57   1e-09

>gi|152981742|ref|YP_001354271.1| biopolymer transport protein ExbB
           [Janthinobacterium sp. Marseille]
          Length = 203

 Score = 56.6 bits (135), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 33/201 (16%)

Query: 19  PILALLLLVVLAVS--VERFIFFARCLPSGKRIDEALTQADHQNTAALQDIVQRYRS--- 73
           PI  LL+  V+A++  +ER ++  R     +RI            + L+++V+ YRS   
Sbjct: 11  PIWLLLIASVIALTLIIERSMYLRR-----RRI---------LPPSLLEEVVRVYRSGRI 56

Query: 74  --TIFGPTLQASVESRALASG--------EAMERYIDESIVRTMPELDRSLWLLGAAITL 123
              +     Q S   R LA+G        + M+  I+E+   T   L+R L  LG   TL
Sbjct: 57  DDNVVNTLEQNSPLGRVLAAGLRNVDAPRDVMKESIEEAGRGTAHTLERFLTTLGTIATL 116

Query: 124 GPLIGLLGTIIGITESF---NVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGVAANSY 180
            PL+GL GT++G+ E F   N  GT G++   + +GI  +L  TG GL +A+  +    +
Sbjct: 117 APLMGLFGTVVGMIEIFGSQNATGT-GANPAQLAHGISIALYNTGFGLAIAMPSLVFYRH 175

Query: 181 FAKRVRLALLELDLIKLVFIK 201
           F   V   +++++   + F+ 
Sbjct: 176 FRALVDSFIIDMEQQAVKFVD 196


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 387,622
Number of extensions: 11990
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 160
Effective length of database: 921,564
Effective search space: 147450240
Effective search space used: 147450240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)