BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2641.p
         (354 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981354|ref|YP_001353678.1| glycine cleavage T protein [Jan...   414   e-117

>gi|152981354|ref|YP_001353678.1| glycine cleavage T protein
           [Janthinobacterium sp. Marseille]
          Length = 349

 Score =  414 bits (1064), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/346 (59%), Positives = 248/346 (71%), Gaps = 1/346 (0%)

Query: 9   SAWRDFLTQQGAQF-DAESNDVLGFGPDAPAPQSLESFMAPLTGLGLIAATGEEAASFLH 67
           + W  FL  QGA   D  +  ++ FG + P   +  +F+APLT LGLIAA+G++AA+FLH
Sbjct: 2   TTWLTFLADQGANISDDAAPRIVSFGAEIPGETAKTNFIAPLTHLGLIAASGDDAANFLH 61

Query: 68  GQLTNDVQHLDSNAARLAGYCSPKGRLLATLLIWRDAQTIYLQLPRSLQPAIQKRLQMFI 127
            QLTNDV+HL S+ ARLAGYCSPKGRLLA+ L W+ A  I LQLPR LQ  IQKRLQMFI
Sbjct: 62  NQLTNDVEHLGSSEARLAGYCSPKGRLLASFLYWQTADRIMLQLPRELQATIQKRLQMFI 121

Query: 128 MRAKAKLADAGTEYAVLGLVGPAAANALAEWFPVTPAAPYDKLDNSHGSLIRMADAAGSA 187
           +RAKAKLAD   EY +LG+ GPAAA+AL  WFP  P A Y K+DN  G++IR ++A    
Sbjct: 122 LRAKAKLADVSEEYVMLGIAGPAAASALMPWFPTLPVAIYGKVDNEAGTVIRHSNAFEVP 181

Query: 188 RYQWIAPVDTLTAAWPKLAQHLKPTASLAWRLSDIRAGVPGIVAATQEQFVPQMINFELI 247
           RYQWI  V+    AWP L + L+ + + AW L++I  GVP I AATQEQFVPQMINFEL+
Sbjct: 182 RYQWITTVEQAIEAWPHLTEILQASGADAWHLAEIDGGVPHITAATQEQFVPQMINFELL 241

Query: 248 GGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATIDSAAAQAGQEVFAAADPGQPCGMVVN 307
           GGVNFKKGCYPGQEIVARSQYLGKLKRR + A++ +     G E+F+A DP QPCGMVVN
Sbjct: 242 GGVNFKKGCYPGQEIVARSQYLGKLKRRMLHASVTATQVAPGTEIFSANDPDQPCGMVVN 301

Query: 308 AEALDDGRALALVEMKLAAADDTVHLGAADGPALHFHALPYELADP 353
           AE      +  LVE+KLAA D  VHLG+A GP L F  LPY L DP
Sbjct: 302 AERSGADISDCLVEIKLAATDAPVHLGSASGPLLSFQPLPYPLTDP 347


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 839,290
Number of extensions: 33538
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 270
Effective length of database: 910,473
Effective search space: 245827710
Effective search space used: 245827710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)