BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2640.p
         (326 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981096|ref|YP_001353677.1| hypothetical protein mma_1987 [...   446   e-127

>gi|152981096|ref|YP_001353677.1| hypothetical protein mma_1987
           [Janthinobacterium sp. Marseille]
          Length = 329

 Score =  446 bits (1147), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 264/327 (80%), Gaps = 1/327 (0%)

Query: 1   MKKLLATLFVLAALVAAAGVYWSKQPIVPPEGQV-IAFTITPGAGVSGAAQQIAAAGVPV 59
           MKKL   + +L  +  A+ ++W++QPI+P E    + FTI  G+G+  + QQI AAGVP 
Sbjct: 1   MKKLFRRIILLGIIAGASFMFWAEQPILPAEQTSGVEFTIAAGSGLRSSMQQIDAAGVPA 60

Query: 60  NPDLFALYARLSGEGARIKAGSYEIKPGYTPQRLLLQLVRGEFAQEALTIIEGWTFKQMR 119
           NP L  + A+++G   ++KAG+YE+KPG TP  L+ QLVRGEF QEALTIIEGW F+QMR
Sbjct: 61  NPWLMTVLAQITGNSTKLKAGTYELKPGTTPNGLIKQLVRGEFVQEALTIIEGWNFRQMR 120

Query: 120 KAIAAQPSLKHDTSNWTDQQILAKLTTEYTYPEGLFFPDTYLFAKGASDMQVYKQAFTLM 179
           +AI   P L+HDT+  +D+ ++AK++T++  PEGLF+PDTYLFAK +SD+Q+YKQA +LM
Sbjct: 121 QAIDGHPGLRHDTAGLSDKDLMAKVSTDFPLPEGLFYPDTYLFAKNSSDLQIYKQAHSLM 180

Query: 180 SKKLNEAWARRDLSLPYRTPYEALIMASIVEKETGQKSERGMVAGVFINRLRTGMLLQTD 239
            K+LNEAW  R+ +LPY TPYEALIMASIVEKETG+KSERGM+AGVF+NRLR GMLLQTD
Sbjct: 181 IKRLNEAWLARNDNLPYATPYEALIMASIVEKETGKKSERGMIAGVFVNRLRQGMLLQTD 240

Query: 240 PTVIYGMGDRYQGKIHKVDLLTDTPYNTYTRAGLPPTPIALPGAASLAAALNPDKTEALY 299
           PTVIYGMG++++G I K DL TDTP+NTYTR GLPPTPIALPGA SL AA+NP KT+A+Y
Sbjct: 241 PTVIYGMGEQFKGNIRKRDLQTDTPHNTYTRLGLPPTPIALPGAESLHAAMNPAKTDAVY 300

Query: 300 FVARGDGTSHFSSNLNEHNQAVNRYQR 326
           FVARGDG+S FS+ L+EHN AVN+YQR
Sbjct: 301 FVARGDGSSQFSATLDEHNNAVNKYQR 327


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 728,303
Number of extensions: 29411
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 243
Effective length of database: 914,170
Effective search space: 222143310
Effective search space used: 222143310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)