BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2638.p
         (345 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980371|ref|YP_001353675.1| DNA polymerase III subunit delt...   468   e-133
gi|152979856|ref|YP_001354020.1| DNA polymerase III gamma and ta...    73   2e-14

>gi|152980371|ref|YP_001353675.1| DNA polymerase III subunit delta'
           [Janthinobacterium sp. Marseille]
          Length = 344

 Score =  468 bits (1203), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/342 (68%), Positives = 277/342 (80%), Gaps = 3/342 (0%)

Query: 6   SEVLLPWQGESWRQLQQLRERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPQAHACG 65
           S  L PWQ  SW+QLQQLRERLPHA+LF+GA G GKT F EAFA+SLLCE+P    HACG
Sbjct: 2   STTLYPWQQASWQQLQQLRERLPHAILFHGAEGIGKTAFAEAFAQSLLCETPAADGHACG 61

Query: 66  VCASCNWFSQSNHPDYRRVRPEMLEE-EMAEDEAGE--EKKSTKASKAPSKDIKIDQIRA 122
            C +C WF+Q +HPDYRRVRPE+L++ + AE E  E  + K  K +KAPSK+IKIDQIRA
Sbjct: 62  SCIACGWFTQYSHPDYRRVRPEILDDGDSAEGEDAEAADTKKAKTTKAPSKEIKIDQIRA 121

Query: 123 LADFMNVSTHRSGLRVVMLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLPTI 182
           L DFMN+STHRSG+RVV+LYPAE LNTAAAN+LLK LEEPPP TMFLL+SN LDRLLPTI
Sbjct: 122 LGDFMNISTHRSGMRVVVLYPAEVLNTAAANSLLKMLEEPPPQTMFLLVSNSLDRLLPTI 181

Query: 183 LSRCRKFALTAPGHDEALAWLKQQGVKDADAWLAEQGGAPLAALQAAQGEGREALDELLR 242
           LSRCRKFAL  PG DEAL WLK Q V +AD WLAEQGGAPLAA  A+Q   RE +D+ LR
Sbjct: 182 LSRCRKFALALPGRDEALQWLKSQQVSEADGWLAEQGGAPLAAFDASQAGMRETMDDFLR 241

Query: 243 HLAQPGVDGALRAADKLQKTPAAELVGWVQRWLYDLLSLKSAGVVRYYPRYGKELGRLAG 302
            LAQPGVDGAL+AAD+LQKTP  ELV W+QRWLYD+LS+K +G +RYYPRY KELG LA 
Sbjct: 242 QLAQPGVDGALKAADRLQKTPVPELVAWLQRWLYDVLSVKLSGTIRYYPRYKKELGALAQ 301

Query: 303 RVEALALTRALRGMGERRAIADHPLSAKLFIEEMLIDYARLF 344
           RVE  AL + ++ + +RRAIA+HPL+ KLFIE+ML++Y+ +F
Sbjct: 302 RVETAALLQEIKAVNDRRAIAEHPLAPKLFIEDMLLEYSTIF 343


>gi|152979856|ref|YP_001354020.1| DNA polymerase III gamma and tau
           subunit [Janthinobacterium sp. Marseille]
          Length = 673

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 74/181 (40%), Gaps = 35/181 (19%)

Query: 24  RERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPQ----AHACGVCASCNWFSQSNHP 79
            +RL HA LF G  G GKT      AKS  C  P       +  CGVC +C         
Sbjct: 34  NQRLHHAYLFTGTRGVGKTTLSRILAKSFNCVGPDGNGGITSTPCGVCEACVAIDAGRFV 93

Query: 80  DYRRVRPEMLEEEMAEDEAGEEKKS--TKASKAPSKDIKIDQIRALADFMNVSTHRSGLR 137
           DY       +E + A +   +E      +A  APS                     +  +
Sbjct: 94  DY-------IEMDAASNRGVDEMAQLLEQAVYAPSN--------------------ARFK 126

Query: 138 VVMLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLPTILSRCRKFAL--TAPG 195
           V M+     L   A N++LKTLEEPP    F+L +    ++  T+LSRC +F L    PG
Sbjct: 127 VYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPG 186

Query: 196 H 196
           H
Sbjct: 187 H 187


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 641,150
Number of extensions: 20588
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 261
Effective length of database: 910,473
Effective search space: 237633453
Effective search space used: 237633453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)