BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2637.p
         (445 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982777|ref|YP_001354325.1| two-component sensor histidine ...   170   1e-43

>gi|152982777|ref|YP_001354325.1| two-component sensor histidine
           kinase [Janthinobacterium sp. Marseille]
          Length = 448

 Score =  170 bits (431), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 218/456 (47%), Gaps = 60/456 (13%)

Query: 10  ATHDPVNPPQHLLLSRLFWLRWAMVAGELLVLAGAHFWLGIALPLAELGALIALQGLING 69
           AT D  N   H  + +L  LRW  V G++  +A      GI LP+  +  L  L  L+  
Sbjct: 19  ATTDGENSVGHKNMQQLIQLRWIAVVGQITTIAVVTLGFGIELPVRHM--LEVLVCLVAF 76

Query: 70  LTWLRLRW-VRPA-EQGELFAQLLIDVTVLTGLLYLSGGSTNPFVSFYLPALAAGAASL- 126
                LRW  RP+    ELF  LL+DV +LT  LYLSGG+TNPF+  YL  +   A  L 
Sbjct: 77  NIASHLRWHERPSVSNSELFLALLVDVGILTAQLYLSGGTTNPFIFLYLLQVILSAVLLE 136

Query: 127 ---TWPYALLLALCALGAYSGLVYFYQPLHI-HDHG-QAMAYHLAGMWINFSISALLITW 181
              TW    + + C +     L     PL + +DH  +  + ++ GM I F+++A+L+ +
Sbjct: 137 AWSTWIIVAITSACLVA----LSILSSPLTLPYDHEYRFFSMYVQGMLICFALNAILLAF 192

Query: 182 FVSRIAAAVRSRDGQLAQARERQLQSHRIVALGTQAAGAAHALNTPLSTVAVIAGELRR- 240
           F++RI   +R+ D QLA  R+R  +   IV +G  A+GAAH L TPL+T++VI G+ RR 
Sbjct: 193 FITRINRNLRAGDAQLADLRKRAAEEENIVRMGLLASGAAHELGTPLATLSVILGDWRRM 252

Query: 241 -EMAANPALRPYEEDVRIVEEQIAVCKAALENMRLDADAQLRNEDSAAIT--PWLTSLLE 297
            E + NP L   ++++  +E Q+  CKA + ++ L A  + R E S   T   +L  L E
Sbjct: 253 PEFSNNPEL---QDEIIEMETQLKRCKAIVSSILLSA-GEARGESSVKTTLSTFLNDLAE 308

Query: 298 GWRLRHPAVLLVAEVHQ------PGWVASQLQDLSQILLTLLDNAAHAVRSLGHQGEIRI 351
            WR  H   +   E         P    S L+   Q++  +LDNA  A            
Sbjct: 309 EWR--HSRAITSFEYKNRIEQDIPVVFDSVLK---QMICNVLDNAVEA------------ 351

Query: 352 RLLPAEALDVAQGGKALALKPGKKTAIIE--VADNGSGIAPELLQRLGHG-PVTSGSGGS 408
                           L+L+  +K  ++   + D G G AP +L ++G     T G  GS
Sbjct: 352 ------------SPHWLSLEVSRKEDLLTLLITDAGPGFAPGMLSQIGKPYQSTKGRPGS 399

Query: 409 GIGLMLAFAAATHLGGKLRLRSTVGQGTVAQLRFPL 444
           G+GL L    A  LGG +  R+    G   +L  PL
Sbjct: 400 GLGLFLVVNVARKLGGTVAARNRAEGGAAVELTLPL 435


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 837,445
Number of extensions: 27252
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 359
Effective length of database: 903,079
Effective search space: 324205361
Effective search space used: 324205361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)