BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2636.p (182 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980766|ref|YP_001354324.1| two-component response regulato... 128 2e-31 gi|152981350|ref|YP_001354553.1| two-components system response ... 65 3e-12 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 63 1e-11 gi|152981423|ref|YP_001354086.1| two-components system response ... 56 1e-09 gi|152981318|ref|YP_001352484.1| response regulator of copper se... 55 3e-09 >gi|152980766|ref|YP_001354324.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 179 Score = 128 bits (322), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 105/178 (58%), Gaps = 9/178 (5%) Query: 5 FLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKD-SGLQ 63 LI++D+ FA TL RS RRG+ +A + E A R +A +DL+LE + SGL Sbjct: 8 LLIIEDDAAFARTLGRSFERRGYTVLLAANLEAASALLREHNPGYAVVDLKLEGNTSGLA 67 Query: 64 WVSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHAAEGAAA 123 V L + P ++VLTG+AS+ T V+AIK GA YLAKP+N D I +A H A Sbjct: 68 CVQMLHKHDPAMLIVVLTGFASLNTAVEAIKLGACQYLAKPSNTDDIEAAFGHVA----- 122 Query: 124 AEPVLPVEEAS-PLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 V+ +E ++ S++ LEWE I VL E + NIS AR L MHRRTL RKL K+ + Sbjct: 123 --GVVEIEVSNRSTSIKTLEWERIHEVLVETDFNISEAARRLGMHRRTLARKLEKQRI 178 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 64.7 bits (156), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 7/169 (4%) Query: 5 FLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQW 64 L+ +D+ V A L RSL + G+ +G EA + FD +DL L K SGL+ Sbjct: 3 ILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGLEV 62 Query: 65 VSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHAAEGAAAA 124 + LR + +L+LT SI V+ + GAD+++AKP + + + + A Sbjct: 63 LQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGAGG 122 Query: 125 EPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQR 173 P V + PLS ++ + R+ ++ + +AR L + LQR Sbjct: 123 GPT--VIKHGPLS-----YDQVGRIAYINDQMLDLSARELGLLEVLLQR 164 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 62.8 bits (151), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%) Query: 4 AFLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQ 63 + LI+DD S L R+L R R S E A ++ FD +D L SG+ Sbjct: 44 SILIVDDEPGMRSFLQRTLVGRCSRVEAVDSVEAANVLLGQQHFDLIILDNSLPGKSGVD 103 Query: 64 WVSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHA 117 W+ +R+ ++++T +A + T ++A+++GA ++L KP V+ ILSA+ Sbjct: 104 WLQEIRELGLHNDVVLITAFADLETAIRALRAGAADFLLKPFRVNQILSAIGRC 157 >gi|152981423|ref|YP_001354086.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 221 Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Query: 4 AFLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQ 63 A L+ DD DV L ++L GF + G +A E FD A +DL L + GL Sbjct: 3 ALLVEDDPDVGQHVL-QALQEAGFVVDWSRDGNDAWFKGDVEEFDVAILDLGLPQLDGLS 61 Query: 64 WVSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHAAEGAAA 123 + R A +L+L+ + + V+ I+SGAD+YLAKP V +++ AA Sbjct: 62 VLRRWRAAKRTFPVLILSARSDWSEKVEGIESGADDYLAKPFEVAELIARTRALVRRAAG 121 Query: 124 -AEPVL 128 A+PVL Sbjct: 122 HADPVL 127 >gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 227 Score = 55.1 bits (131), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 49/100 (49%) Query: 5 FLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQW 64 L+++D + A + + L GF VA +G + A E +D +D+ L G Sbjct: 3 ILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGWHI 62 Query: 65 VSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKP 104 V LR A Q +L LT S+ V+ ++ GAD+YL KP Sbjct: 63 VKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKP 102 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.128 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 300,248 Number of extensions: 8170 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 10 Length of query: 182 Length of database: 1,221,021 Length adjustment: 78 Effective length of query: 104 Effective length of database: 932,655 Effective search space: 96996120 Effective search space used: 96996120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)