BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2635.p
         (259 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980576|ref|YP_001353672.1| Mg-dependent DNase [Janthinobac...   431   e-122
gi|152980751|ref|YP_001352957.1| Mg-dependent DNase [Janthinobac...   127   5e-31

>gi|152980576|ref|YP_001353672.1| Mg-dependent DNase
           [Janthinobacterium sp. Marseille]
          Length = 259

 Score =  431 bits (1107), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/257 (80%), Positives = 236/257 (91%)

Query: 1   MYIDSHCHINFPDLAARLPEIFGKMAENQVSHALCVSVDLPDFPQVLALAEQYPNVYASV 60
           M+IDSHCHINFP+LAAR+PEI GKMAEN+VSHALCVSVDLPDFP VL LAE+YP++YASV
Sbjct: 1   MFIDSHCHINFPELAARMPEILGKMAENKVSHALCVSVDLPDFPSVLELAERYPHIYASV 60

Query: 61  GVHPDYEDTPEPSLEELVRLADHPRIVAIGETGLDYYRLQGDLEWQRERFRTHIRASRAT 120
           GVHPDYEDTPEPS+E+LVRL++HP+IVAIGETGLDYYRL+GDLEWQRERFR HIRASRAT
Sbjct: 61  GVHPDYEDTPEPSVEDLVRLSEHPKIVAIGETGLDYYRLEGDLEWQRERFRRHIRASRAT 120

Query: 121 GKPLIIHTRSASEDTLRILREEGASPAAGGVAGVMHCFTESQEVADAAIELGFYISFSGI 180
           GKPLIIHTR+ASEDT+RI+REEGA   AGG AGVMHCFTES EVA AA+++GFYISFSGI
Sbjct: 121 GKPLIIHTRAASEDTIRIMREEGAGTDAGGAAGVMHCFTESLEVARAAMDMGFYISFSGI 180

Query: 181 VTFKSAKDLQQVARTIPLERMLIETDSPYLAPVPFRGKTNEPGYVRHVGEFIADLRGISA 240
           VTFKSAKDLQ VAR +PLE+MLIETDSPYLAPVP RGK NEPG VRHVGE++A L+G+  
Sbjct: 181 VTFKSAKDLQAVAREVPLEQMLIETDSPYLAPVPHRGKVNEPGLVRHVGEYLATLKGVPL 240

Query: 241 AEVARQTSDNFFKLFAI 257
            ++A+QTSDNFF LF I
Sbjct: 241 EQLAQQTSDNFFNLFKI 257


>gi|152980751|ref|YP_001352957.1| Mg-dependent DNase
           [Janthinobacterium sp. Marseille]
          Length = 270

 Score =  127 bits (320), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 136/259 (52%), Gaps = 15/259 (5%)

Query: 1   MYIDSHCHINFPDLAARLPEIFGKMAENQVSHALCVSVDLPDFPQVLALAEQYPNVYASV 60
           M++D+HCH++  + A     +    A+ QVS  +  +V   +F  V  LA ++ N   ++
Sbjct: 6   MWVDTHCHLDAAEFAGVEDAVAEGAAQKQVSMIVIPAVARDNFVTVAELARKHGNCSYAL 65

Query: 61  GVHPDYEDTPEPS----LEELVRLA-DHPRIVAIGETGLDYYRLQGDLEWQRER----FR 111
           G+HP Y    + S    L E V  A +  R VA+GE GLD++         RE+    + 
Sbjct: 66  GIHPIYVPRAQESDLALLRETVAAAMNDTRFVALGEIGLDFFVPMLTTPEMREKQEFFYA 125

Query: 112 THIRASRATGKPLIIHTRSASEDTLRILREEGASPAAGGVAGVMHCFTESQEVADAAIEL 171
             ++ +R    P+++H R + +  L+ LR          V G+ H F  S + A+  I L
Sbjct: 126 EQLKIARDFDLPVLLHVRRSQDSILKYLRRIKV------VGGIAHAFNGSFQQAETFISL 179

Query: 172 GFYISFSGIVTFKSAKDLQQVARTIPLERMLIETDSPYLAPVPFRGKTNEPGYVRHVGEF 231
           GF + F G +TF  A  ++++A T+ LE +++ETD+P ++P     + N P  + ++G+ 
Sbjct: 180 GFKLGFGGAMTFTRALQIRRMASTLALESIVLETDAPDISPAWLHPQRNSPEELPNIGQV 239

Query: 232 IADLRGISAAEVARQTSDN 250
           +A+LRG+    VARQT+ N
Sbjct: 240 LAELRGLPLDAVARQTTAN 258


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 561,847
Number of extensions: 22150
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 178
Effective length of database: 921,564
Effective search space: 164038392
Effective search space used: 164038392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)