BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2634.p
         (223 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982013|ref|YP_001353671.1| hypothetical protein mma_1981 [...   200   7e-53

>gi|152982013|ref|YP_001353671.1| hypothetical protein mma_1981
           [Janthinobacterium sp. Marseille]
          Length = 232

 Score =  200 bits (508), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 102/200 (51%), Positives = 141/200 (70%), Gaps = 1/200 (0%)

Query: 24  LLPGAARAGAYEEYFQAIRMDNVYFLKQLMQRGMGPNLIEPKRGYTGLMLAIREDSMKAF 83
           L P  ARAGAYE++F+A+ +D+   +  L++RG  PN IE  RG +GL+LA+RE SMK F
Sbjct: 30  LCPPLARAGAYEDFFRAVSLDDAQTVTTLLKRGFDPNTIEGVRGDSGLILAMREGSMKVF 89

Query: 84  DVLVNAPDVNLEAQATNGDTPLMLASFYGNVPVVKLLLARQVEVNRPGWTALHYAAINGS 143
            VL+NA  ++LE QA NGDT LM+A+F  N+P V+ LLA+   VN+ GWTALHYAA +G 
Sbjct: 90  PVLLNARGIDLEQQARNGDTALMIAAFKANMPAVQALLAKGAAVNKSGWTALHYAAASGD 149

Query: 144 SEIVKLLLDASAYVDAESPDDKMTPVMLAAMRGRVAAVEVLRDNGADLSLKNKDGLTAMD 203
           SEIVK+L+   A +DA SP +K TP+M+AA  G + +V+VL D GAD SLKN  G+TA+D
Sbjct: 150 SEIVKILVKQGAELDAPSP-NKTTPMMMAARGGFIYSVKVLSDAGADASLKNDVGMTAID 208

Query: 204 LAKRYGQDGVIDALNEKPRQ 223
            A+  G   ++D L  + ++
Sbjct: 209 FARENGSTDIVDGLTYRLKK 228


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 515,951
Number of extensions: 20283
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 143
Effective length of database: 925,261
Effective search space: 132312323
Effective search space used: 132312323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)