BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2633.p
         (380 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980344|ref|YP_001353278.1| L-lactate dehydrogenase (cytoch...   536   e-154

>gi|152980344|ref|YP_001353278.1| L-lactate dehydrogenase
           (cytochrome) [Janthinobacterium sp. Marseille]
          Length = 381

 Score =  536 bits (1382), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 255/380 (67%), Positives = 313/380 (82%), Gaps = 4/380 (1%)

Query: 1   MPVMTCVEDFRLLAKKRVPKAFYDYADSGSYTESTYRANSRDLAALKLRQRVAINVDERS 60
           M V+T +ED R+LA+KRVP+ FYDYAD+GS+TESTYRANS D A +K RQRVA+N++ R+
Sbjct: 1   MSVITNIEDLRVLAQKRVPRMFYDYADAGSWTESTYRANSSDFAPMKFRQRVAVNMENRT 60

Query: 61  TRSTMIGHDVTMPVAIAPTGLTGMQWANGEMLGAIAAEKFGIPFTLSTMSICSIEDVASV 120
            ++TM+G +V MPVAIAPTGLTGMQ A+GE+L A AAEKFG+PFTLSTMSICSIED+A+ 
Sbjct: 61  LKTTMVGQEVHMPVAIAPTGLTGMQHADGEILAARAAEKFGVPFTLSTMSICSIEDIAAN 120

Query: 121 TSKPFWFQLYVMRDRGFVKSLIERAKAAKCSALVLTLDLQILGQRHKDLKNGMSVPPKLT 180
           TSKPFWFQLYVM+DR F++ LIERAK AKCSALVLTLDLQILGQRHKDLKNG+S PPKLT
Sbjct: 121 TSKPFWFQLYVMKDRPFIERLIERAKVAKCSALVLTLDLQILGQRHKDLKNGLSAPPKLT 180

Query: 181 LDTLLDLASKPGWALRALG-GRKTFGNLAGHIKGGEGAGGVQTLSKWTASQFDPTLNWDD 239
           +  ++++ +KP W +  LG  R++FGN+ GH         + +LS WT+ QFD  L+W D
Sbjct: 181 VANIVNMMTKPRWCMGMLGTKRRSFGNIVGH---ASDVSDMSSLSSWTSQQFDLALSWKD 237

Query: 240 VAWIKQQWGGKLILKGILDVEDAKLAVQSGADAIVVSNHGGRQLDGAMSSIEALPAIAQA 299
           V WIK+ WGGKLI+KGI+D EDA+LAV SGADAI+VSNHGGRQLDGA+SSI ALP+I +A
Sbjct: 238 VEWIKRCWGGKLIIKGIMDAEDARLAVASGADAIIVSNHGGRQLDGALSSIAALPSIVEA 297

Query: 300 VGDQIEVWFDGGIRSGQDVLKAVALGARGTMIGRAFLYSLGAMGGEGVSQMLEIMRKELD 359
           VGDQIEV  DGGIRSGQDV+KA+ALGA+GT IGR+FLY LGAMG EGV++ L+I+  ELD
Sbjct: 298 VGDQIEVHMDGGIRSGQDVIKALALGAKGTYIGRSFLYGLGAMGEEGVTKCLKIIENELD 357

Query: 360 VSMALTGTKDIKDVGPQILI 379
           ++MA  G  D+K V   ILI
Sbjct: 358 LTMAFCGLTDVKKVDKNILI 377


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 839,409
Number of extensions: 33431
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 295
Effective length of database: 906,776
Effective search space: 267498920
Effective search space used: 267498920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)