BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2631.p
         (277 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979842|ref|YP_001353218.1| phytoene synthase [Janthinobact...   477   e-136
gi|152980355|ref|YP_001353219.1| squalene/phytoene synthase prot...    88   7e-19

>gi|152979842|ref|YP_001353218.1| phytoene synthase
           [Janthinobacterium sp. Marseille]
          Length = 277

 Score =  477 bits (1227), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 224/277 (80%), Positives = 244/277 (88%)

Query: 1   MSPDEYCQQKAAASGSSFYYSFLFLPPPRRLAITALYAFCREVDDTVDEIEDPMVARTKL 60
           MSPDEYCQQKAA SGSSFYYSFLFL P RR AITALYAFCREVDDTVDE  D M+ARTKL
Sbjct: 1   MSPDEYCQQKAAQSGSSFYYSFLFLTPDRRRAITALYAFCREVDDTVDECTDVMIARTKL 60

Query: 61  MWWRKEIAAMLEGQPTHPVTKALHPHMASYQLKGEHLQAIIDGMEMDLDQSRYLDYPGLQ 120
           +WWRKE+ AM+ G+PTHPVTKAL PHMA Y L  EHL AIIDGMEMDLDQ+RYLD+ GLQ
Sbjct: 61  VWWRKEVGAMMAGEPTHPVTKALQPHMAVYALDSEHLLAIIDGMEMDLDQNRYLDFIGLQ 120

Query: 121 RYCWHVAGVVGVLSASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNE 180
           +YCWHVA VVG+LSA IFG T P TL +AEKLGLAFQLTNIIRDVGED RKGRIYLPVNE
Sbjct: 121 KYCWHVASVVGILSAKIFGATSPKTLEYAEKLGLAFQLTNIIRDVGEDARKGRIYLPVNE 180

Query: 181 LQQFNVTAADILNARHSERFQALMKFQVERAQAVYDEAFALLPKEDRRAQRPGLMMAAIY 240
           LQQFNVTAA+ILNARHSE F+ LM+FQ  RAQ +YDEAFALLPKEDRRAQRPGL+MAAIY
Sbjct: 181 LQQFNVTAAEILNARHSENFEKLMQFQAARAQKLYDEAFALLPKEDRRAQRPGLIMAAIY 240

Query: 241 RTLLDEIARDGYQVLNQRISLTPIRKLWLAWKTYVFG 277
           R +L+E+ RDG+ VLNQRISLTPIRKLWLAW TY+ G
Sbjct: 241 RAVLNEVERDGFHVLNQRISLTPIRKLWLAWITYIRG 277


>gi|152980355|ref|YP_001353219.1| squalene/phytoene synthase protein
           [Janthinobacterium sp. Marseille]
          Length = 291

 Score = 87.8 bits (216), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 2/200 (1%)

Query: 17  SFYYSFLFLPPPRRLAITALYAFCREVDDTVDEIEDPMVARTKLMWWRKEIAAMLEGQPT 76
           +F  + + LP   R A+  +YAF R  DD  DE       R   +   ++    +E   T
Sbjct: 27  NFPVASILLPARLRPAVEVIYAFARSADDLADEGNATPDERLAALAAYEQQLDQIEAGTT 86

Query: 77  HPVT--KALHPHMASYQLKGEHLQAIIDGMEMDLDQSRYLDYPGLQRYCWHVAGVVGVLS 134
                 + L   +A Y L  +  + ++   + D+  +RY  +  L  YC   A  VG L 
Sbjct: 87  ADTALFRKLAQVIAEYHLPLQPFRDLLSAFKQDVVTTRYAGFNDLLDYCRRSANPVGTLM 146

Query: 135 ASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNELQQFNVTAADILNA 194
             ++G    G L  ++ +  A QL N  +DV  D +K RIYLP  +LQ+FN+    I   
Sbjct: 147 LHLYGAANAGNLRESDDICSALQLINFWQDVAIDWQKERIYLPQQDLQKFNIAEQQIAQQ 206

Query: 195 RHSERFQALMKFQVERAQAV 214
                ++ LM+F+V+RA+A+
Sbjct: 207 TVDAAWRQLMQFEVQRARAM 226


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 606,858
Number of extensions: 23617
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 195
Effective length of database: 917,867
Effective search space: 178984065
Effective search space used: 178984065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)