BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2629.p
         (269 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980355|ref|YP_001353219.1| squalene/phytoene synthase prot...   383   e-108
gi|152979842|ref|YP_001353218.1| phytoene synthase [Janthinobact...    98   5e-22

>gi|152980355|ref|YP_001353219.1| squalene/phytoene synthase protein
           [Janthinobacterium sp. Marseille]
          Length = 291

 Score =  383 bits (983), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/269 (70%), Positives = 220/269 (81%)

Query: 1   MAVDHYENFPVASLLLPARLRPAVAAIYAFARSADDIADEGEASSAERLAALQAYEAQLD 60
           M+VDHYENFPVAS+LLPARLRPAV  IYAFARSADD+ADEG A+  ERLAAL AYE QLD
Sbjct: 20  MSVDHYENFPVASILLPARLRPAVEVIYAFARSADDLADEGNATPDERLAALAAYEQQLD 79

Query: 61  LIAARVSCTLPLLQRLQQTIAQYALPLQPLRDLLSAFRQDVVTTRYPHYQDLLDYCRRSA 120
            I A  +    L ++L Q IA+Y LPLQP RDLLSAF+QDVVTTRY  + DLLDYCRRSA
Sbjct: 80  QIEAGTTADTALFRKLAQVIAEYHLPLQPFRDLLSAFKQDVVTTRYAGFNDLLDYCRRSA 139

Query: 121 NPVGTLMLHLYGAANEENLRDSDAICSALQLINFLQDIAIDWQKARIYLPLEDLERFGVS 180
           NPVGTLMLHLYGAAN  NLR+SD ICSALQLINF QD+AIDWQK RIYLP +DL++F ++
Sbjct: 140 NPVGTLMLHLYGAANAGNLRESDDICSALQLINFWQDVAIDWQKERIYLPQQDLQKFNIA 199

Query: 181 QDDIAQACVDLRWQQLMRFQTERARALMLAGAPLAKRLPGRIGLELRMVVQGGLRILERI 240
           +  IAQ  VD  W+QLM+F+ +RARA++L+GAPLA RLPGRIG ELR+VVQGGLRILE +
Sbjct: 200 EQQIAQQTVDAAWRQLMQFEVQRARAMLLSGAPLALRLPGRIGWELRLVVQGGLRILECL 259

Query: 241 EAVQGDVFHHRPKLGKLDWLLVGWRGLRM 269
           EA   D+F  RPKLGK DWLL+  R +RM
Sbjct: 260 EASGYDMFRQRPKLGKSDWLLLLLRAIRM 288


>gi|152979842|ref|YP_001353218.1| phytoene synthase
           [Janthinobacterium sp. Marseille]
          Length = 277

 Score = 98.2 bits (243), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 124/263 (47%), Gaps = 14/263 (5%)

Query: 8   NFPVASLLLPARLRPAVAAIYAFARSADDIADEGEASSAERLAALQAYEAQLDLIAARVS 67
           +F  + L L    R A+ A+YAF R  DD  DE       R   L  +  ++  + A   
Sbjct: 17  SFYYSFLFLTPDRRRAITALYAFCREVDDTVDECTDVMIAR-TKLVWWRKEVGAMMAG-E 74

Query: 68  CTLPLLQRLQQTIAQYALPLQPLRDLLSAFRQDVVTTRYPHYQDLLDYCRRSANPVGTLM 127
            T P+ + LQ  +A YAL  + L  ++     D+   RY  +  L  YC   A+ VG L 
Sbjct: 75  PTHPVTKALQPHMAVYALDSEHLLAIIDGMEMDLDQNRYLDFIGLQKYCWHVASVVGILS 134

Query: 128 LHLYGAANEENLRDSDAICSALQLINFLQDIAIDWQKARIYLPLEDLERFGVSQDDIAQA 187
             ++GA + + L  ++ +  A QL N ++D+  D +K RIYLP+ +L++F V+  +I  A
Sbjct: 135 AKIFGATSPKTLEYAEKLGLAFQLTNIIRDVGEDARKGRIYLPVNELQQFNVTAAEILNA 194

Query: 188 CVDLRWQQLMRFQTERARALM---LAGAPLAKRLPGRIGLELRMVVQGGLRILERIEAVQ 244
                +++LM+FQ  RA+ L     A  P   R   R GL +  + +  L  +ER     
Sbjct: 195 RHSENFEKLMQFQAARAQKLYDEAFALLPKEDRRAQRPGLIMAAIYRAVLNEVER----- 249

Query: 245 GDVFH---HRPKLGKLDWLLVGW 264
            D FH    R  L  +  L + W
Sbjct: 250 -DGFHVLNQRISLTPIRKLWLAW 271


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 561,221
Number of extensions: 21032
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 187
Effective length of database: 917,867
Effective search space: 171641129
Effective search space used: 171641129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)