BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2622.p
         (165 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981450|ref|YP_001351764.1| CreA protein [Janthinobacterium...   229   9e-62

>gi|152981450|ref|YP_001351764.1| CreA protein [Janthinobacterium
           sp. Marseille]
          Length = 159

 Score =  229 bits (583), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 113/158 (71%), Positives = 131/158 (82%), Gaps = 3/158 (1%)

Query: 8   LVGAILSICTMAAIVPHAASAEELADVSTAFRWLGKNDRVVIEAYDDPKVVGVTCYVSRA 67
           L G IL+  T AA+  HA   +++ +VSTAFR+LGKNDR+VIEAYDDPKV+GV+C+VSRA
Sbjct: 5   LAGIILAGSTCAALPLHA---QQIGEVSTAFRFLGKNDRIVIEAYDDPKVLGVSCFVSRA 61

Query: 68  RTGGVKGTVGLAEDKSEASIACRQVAPSIQFQGKLPVQEDVFSERMSILFKRLHVVRVVD 127
           RTGGV GTVGLAED ++ASIACRQV   + F+ KLP QEDVFSER SILFKRLH+VR+VD
Sbjct: 62  RTGGVSGTVGLAEDTADASIACRQVGDVLSFKEKLPKQEDVFSERQSILFKRLHIVRIVD 121

Query: 128 AKRNTLVYLTYSDKLIDGSPMNAVTAVPVAPATPIPVK 165
             RNTLVYLTYSDKLIDGSP N VTAVPV  + PIPVK
Sbjct: 122 PVRNTLVYLTYSDKLIDGSPKNGVTAVPVPRSNPIPVK 159


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 320,474
Number of extensions: 11650
Number of successful extensions: 21
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 89
Effective length of database: 940,049
Effective search space: 83664361
Effective search space used: 83664361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)