BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2620.p
         (208 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980689|ref|YP_001353221.1| protease subunit of ATP-depende...   382   e-108

>gi|152980689|ref|YP_001353221.1| protease subunit of ATP-dependent
           Clp proteases [Janthinobacterium sp. Marseille]
          Length = 210

 Score =  382 bits (982), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/207 (88%), Positives = 195/207 (94%)

Query: 2   TGLMKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQ 61
           T + + SALDT MLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVND MANLIVAQ
Sbjct: 4   TSMTRTSALDTDMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDQMANLIVAQ 63

Query: 62  LLFLESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAG 121
           LLFLESENPDKDISLYINSPGGSVSAGMAI+DTMQFIKP VSTLCTGLAASMGAFLLAAG
Sbjct: 64  LLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPNVSTLCTGLAASMGAFLLAAG 123

Query: 122 AKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISK 181
            KGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLN ILAE+TG++VE+I+K
Sbjct: 124 EKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNAILAERTGKSVEEIAK 183

Query: 182 DTDRDNFMSAEAAAEYGLIDQVLTQRA 208
           DTDRDNFMSA+AA  YG+ID+VL  RA
Sbjct: 184 DTDRDNFMSADAAVTYGMIDKVLATRA 210


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 410,099
Number of extensions: 14081
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 129
Effective length of database: 928,958
Effective search space: 119835582
Effective search space used: 119835582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)