BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2619.p
         (421 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980700|ref|YP_001353222.1| ATP-dependent protease ATP-bind...   784   0.0  
gi|152981245|ref|YP_001354904.1| ATP-dependent protease ATP-bind...    96   5e-21

>gi|152980700|ref|YP_001353222.1| ATP-dependent protease ATP-binding
           subunit ClpX [Janthinobacterium sp. Marseille]
          Length = 422

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/421 (89%), Positives = 406/421 (96%)

Query: 1   MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEAASVESVTG 60
           MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEA+SVE+V G
Sbjct: 1   MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEASSVETVAG 60

Query: 61  AKSDLPTPQEITDLLDQYVIGQATAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120
            ++DLPTPQE+ +LLDQYVIGQ  AKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG
Sbjct: 61  PRTDLPTPQELCELLDQYVIGQNPAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120

Query: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQKG 180
           PTGSGKTLLAQTLAR L+VPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVE+AQKG
Sbjct: 121 PTGSGKTLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVERAQKG 180

Query: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240
           IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID
Sbjct: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240

Query: 241 TTNIMFICGGAFDGLAKIISDRSEKSGIGFSASVKSQSQKSNSEVLLNAEPEDLVKFGLI 300
           TTNIMFICGGAFDGLAKIIS+RSEKSGIGFSASVKS+ +++ S+V+++ EPEDL+KFGLI
Sbjct: 241 TTNIMFICGGAFDGLAKIISERSEKSGIGFSASVKSREERTASQVMMDTEPEDLIKFGLI 300

Query: 301 PELVGRLPVIATLNELDEEALIQILIEPKNALIKQYAKLLQMEGAELEIRPAAMHAIAKK 360
           PELVGRLPV+ATL ELDEEALIQIL+EPKNALIKQY+KLLQMEGAELEIRPAA+ AIAKK
Sbjct: 301 PELVGRLPVVATLRELDEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAKK 360

Query: 361 ALARKTGARGLRSILEHALLDVMYELPSEQNVAKVVVDENTITNGAKPLLIYHDQPKVSG 420
           A+ARKTGARGLRSILEHALLDVM+ELP+EQNVAKVV+DE TI +GAKPLLIYH+Q KVSG
Sbjct: 361 AIARKTGARGLRSILEHALLDVMFELPNEQNVAKVVIDEGTINHGAKPLLIYHEQAKVSG 420

Query: 421 G 421
            
Sbjct: 421 A 421


>gi|152981245|ref|YP_001354904.1| ATP-dependent protease ATP-binding
           subunit HslU [Janthinobacterium sp. Marseille]
          Length = 449

 Score = 95.5 bits (236), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 13/107 (12%)

Query: 67  TPQEITDLLDQYVIGQATAKRILSVAVYNHYKR------LKHLGKKDDVELAKSNILLVG 120
           TP+EI   LD++V+GQ  AKR +++A+ N ++R      L+H       E+   NIL++G
Sbjct: 4   TPKEIVSELDKHVVGQGRAKRAVAIALRNRWRRQQVAEPLRH-------EITPKNILMIG 56

Query: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLL 167
           PTG GKT +A+ LA++ + PF+  +AT  TE GYVG DV+ II+ L+
Sbjct: 57  PTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLI 103


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 863,652
Number of extensions: 34028
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 335
Effective length of database: 903,079
Effective search space: 302531465
Effective search space used: 302531465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)