BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2616.p (345 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Ma... 182 4e-47 gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinob... 171 5e-44 gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Ma... 112 3e-26 gi|152981709|ref|YP_001352206.1| porin [Janthinobacterium sp. Ma... 104 8e-24 gi|152981829|ref|YP_001355256.1| porin [Janthinobacterium sp. Ma... 100 1e-22 >gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Marseille] Length = 327 Score = 182 bits (461), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 123/348 (35%), Positives = 187/348 (53%), Gaps = 24/348 (6%) Query: 1 MKLRISASSLAGTLLCLCGSAAAQSSVAVYGVVDAGLTWESERHRAGSSTSLVSGGNSAS 60 MK + A S+ L + G+ QSSV VYGVVD GL E+ + G+ T + SG S S Sbjct: 1 MKKTLFAFSM---LASMAGATYGQSSVTVYGVVDLGLKIENAGN--GTVTGIDSGNQSVS 55 Query: 61 RLGFRGSEELGQGWKALFVLESGFSLDDGALGQGGLLWGRKSLVGLSGPYGTLTLGRQDS 120 R+GF+G+E+LG G KA FVLE+GF+ D G+ + R+S V L+G +G + LGR + Sbjct: 56 RVGFKGTEDLGNGLKANFVLEAGFNADSGSQSDATRFFNRQSYVSLAGGFGEVKLGRVQT 115 Query: 121 PLYDYAAPMDPLSGALA--FTRIFTQANKYRRDNNTIKYASPTLGGFKGQLAYSFGETAG 178 ++ +A DP + LA RIF R +NT+ Y+ G GQ AYSFGE AG Sbjct: 116 MVFTNSAVFDPFADTLAGDSVRIFNYGGN--RIDNTVNYSFAAKNGINGQAAYSFGEVAG 173 Query: 179 ASASGRLLSAGLNYTRGASSSSLSMQNINSQAVGNNGIKTIRLVNLGTRYDFKVAAVSLM 238 +++ R ++ + Y G ++ L+ Q+ GN+ KT +G Y+F + + Sbjct: 174 NTSASRTVAGAIGYASGPLATVLTYQDT-KDVTGNDSAKTTL---IGGNYNFGLLQPFIA 229 Query: 239 MQTNKSNEGAKAMDSRDFLAGVSVPL-GAHKISASVIVHKDRKQASGDARQLALGYTYGL 297 NK G +D+RD L G+ + L A I S + +D+ + DA+Q+A+GYT+ L Sbjct: 230 YAVNK---GFGTLDTRDALLGLKINLTSADTIMTSYMQKRDKVIDNADAKQIAIGYTHNL 286 Query: 298 SPRTHLYGGMAHISNNKSARFGLASLAEGGAPDGSDPMLYTAGVKHTF 345 S RT+LY A +SN+ +A + + S G L+ G++H F Sbjct: 287 SVRTNLYTSWARLSNDDNAAYRVTSA-------GKTDKLFNIGIRHKF 327 >gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinobacterium sp. Marseille] Length = 364 Score = 171 bits (434), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 123/362 (33%), Positives = 181/362 (50%), Gaps = 36/362 (9%) Query: 13 TLLCLCGSAAAQSSVAVYGVVDAGLTWESERHRAGSSTSLVSGGNSASRLGFRGSEELGQ 72 L G+A+AQSSV VYG+VD G + + AGS + SGG SASR+GF+G+E+LG Sbjct: 10 VLGAFAGAASAQSSVTVYGIVDLGFAHVDDGNPAGSKNGIDSGGQSASRIGFKGTEDLGN 69 Query: 73 GWKALFVLESGFS---------------LDDGALGQGGLLWGRKSLVGL-SGPYGTLTLG 116 G KALF LE+ + + + R + VGL S +GT+ LG Sbjct: 70 GLKALFQLEATLQADTGAGFGAAAAPATGFNAGVANNAGGFNRFATVGLQSAAFGTVLLG 129 Query: 117 RQDSPLYDYAAPMDPL--SGAL-AFTRIFTQ---ANKYRRDNNTIKYASPTLGGFKGQLA 170 RQ S + D +DP G + A + +F A Y R +N+ KY S + GGFK A Sbjct: 130 RQTSVIKDAYDQIDPFGDGGTVGAISTVFFNGVLAGDYGRISNSAKYQSNSFGGFKFGAA 189 Query: 171 YSFGETAGASASGRLLSAGLNYTRGASSSSLSMQNINSQAVGNNGIKTI--RLVNLGTRY 228 Y FGET G + + GL Y G + + N + V N ++ +L+ LG Y Sbjct: 190 YGFGETPGDTGANSNYGLGLGYANGPLNVQFAYHNQDRSTVANPSVQQAEGKLMLLGATY 249 Query: 229 DFKVAAV-----SLMMQTNKSNEGAKAMDSRDFLAGVSVPLGAHKISASVIVHKDRKQAS 283 DF V + ++ + +N K R+++ GVS P+G I AS + +R + Sbjct: 250 DFGVVKLHGAYGDTKLENSVANTEVK---YRNYMLGVSAPVGPGTIFASYTANDNRSVDN 306 Query: 284 GDARQLALGYTYGLSPRTHLYGGMAHISNNKSARFGLASLAEGGAPDGSDPMLYTAGVKH 343 DA++ A+ Y+Y LS RT+LY G + SN+ +R GL GAP G ++ G++H Sbjct: 307 ADAKKFAISYSYDLSKRTNLYTGYSKTSNDDGSRIGL----NAGAPVGESASIFNVGIRH 362 Query: 344 TF 345 F Sbjct: 363 KF 364 >gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Marseille] Length = 326 Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 146/306 (47%), Gaps = 24/306 (7%) Query: 10 LAGTLLCLCGSAA-AQSSVAVYGVVDAGLTWESERHRAGSSTSLVSGGNSASRLGFRGSE 68 LA + CG+A+ AQSSV VYG++D L ++ + +AG T + +G + S LG +GSE Sbjct: 9 LALAAMLACGTASQAQSSVQVYGLIDVALAYDKQPGKAGV-TGVENGKMTTSYLGLKGSE 67 Query: 69 ELGQGWKALFVLESGFSLDDGALGQ--GGLLWGRKSLVGLSGPYGTLTLGRQDSPLYDYA 126 +LG G +F LES F D G+ G+ G W R S VGL G +G++ LGR PL+ Sbjct: 68 DLGGGLSTIFALESYFRADTGSNGRFDGDGFWTRSSYVGLQGRFGSVRLGRNSVPLFIST 127 Query: 127 APMDPLSGALAFT---RIFTQANKYRRD---NNTIKYASPTLGGFKGQLAYSFGE-TAGA 179 +P + ++ R + + D +++I Y SP G L + GE G Sbjct: 128 LLFNPFGDSFGYSPSIRHYFASGTVTGDSGWSDSIAYVSPNFSGLTVNLIAAAGEGNGGP 187 Query: 180 SASGRLLSAGLNYTRGASSSSLSMQNINSQAVGNNGIKTIRLVNLGTRYDFKVAAVSLMM 239 + G +L YT+G + Q + A I LG+ YDF V V Sbjct: 188 NVGGSVL-----YTKGPLGLTAVYQRVRKGAA----IADTTTWQLGSSYDFDVVKVFAQY 238 Query: 240 QTNKSNEGAKAMDSRDFLAGVSVPLGAHKISASVIVHKDRKQASGDARQ-LALGYTYGLS 298 K+ ++ + GV++PLG K+ A+ + G R+ L+LGY Y LS Sbjct: 239 GQVKNVSAQPDIEYKLTDLGVAIPLGGGKVLAA---YGLLDPVVGAKRETLSLGYDYNLS 295 Query: 299 PRTHLY 304 RT +Y Sbjct: 296 KRTDVY 301 >gi|152981709|ref|YP_001352206.1| porin [Janthinobacterium sp. Marseille] Length = 364 Score = 104 bits (259), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 99/320 (30%), Positives = 141/320 (44%), Gaps = 39/320 (12%) Query: 21 AAAQSSVAVYGVVDAGLTWESERHRAGSSTSLVSGGNSASRLGFRGSEELGQGWKALFVL 80 A AQSSV V GVVD L + AG ++S+ GG + S GF+G+E+LG G KA F L Sbjct: 23 AMAQSSVQVTGVVDTYLGSMKQSGDAGRTSSVNGGGMTTSWFGFKGTEDLGGGLKATFNL 82 Query: 81 ESGFSLDDGALGQ---GGLLWGRKSLVGLSGPYGTLTLGRQDSPLYDYAAPMDPLSGALA 137 S D GA+G+ + R + VGL G +G ++LGR SP + + +P + Sbjct: 83 TSYIRSDIGAIGRFNGNETFFSRDANVGLRGKFGAISLGRDLSPNFLPSVISNPFGDSFQ 142 Query: 138 FTRIFTQ-----------ANKYRRD---NNTIKYASPTLGGFKGQLAYSFGETAGASASG 183 F+ + N D +N I Y +P +GG K + Y FGE AG S Sbjct: 143 FSPLILHKDVPLFNASGWTNSVAGDTGWSNEIMYTTPDIGGLKASINYQFGEVAGKSGKN 202 Query: 184 RL----------LSAGLNYTRGASSSSLSMQNINSQAVGN----NGIKTIRLVN--LGTR 227 + L+ Y + ++ + + N Q N +G+ R +G Sbjct: 203 NVGGNLLYFNGPLALTAYYQKVQVNNPMDLSPNNVQPATNIPFASGMTAARQTAWFVGGA 262 Query: 228 YDFKVAAVSLMMQTNKSNEGAKAMDSRDFLAGVSVPLGAHKISASVIVHKDRKQASGDAR 287 YDF +A L N+S D + F G S+PLG I AS K A G Sbjct: 263 YDFSIA--KLFASYNQSTHDIDLKD-KTFQLGTSIPLGQGAILASWANTKRDGVAVGTEL 319 Query: 288 Q---LALGYTYGLSPRTHLY 304 + + GY Y LS RT +Y Sbjct: 320 KRNTASFGYDYNLSKRTDIY 339 >gi|152981829|ref|YP_001355256.1| porin [Janthinobacterium sp. Marseille] Length = 363 Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 106/359 (29%), Positives = 158/359 (44%), Gaps = 51/359 (14%) Query: 1 MKLRISASSL-AGTLLCLCGSAAAQSSVAVYGVVDAGLTWESERHRAGSSTSLVSGGNSA 59 MK +I S L ++L + AQSSV + G+ D + A ++ + SGG S Sbjct: 1 MKSKILFSVLLTASILSYSSLSRAQSSVTMEGIADGFMGSMRNSGDAARTSKVDSGGLST 60 Query: 60 SRLGFRGSEELGQGWKALFVLESGFSLDDGALGQ--GGLLWGRKSLVGLSGPYGTLTLGR 117 S +GF+G E+LG G KA F L + + +DDGA G+ G + R + V LSG +G L LGR Sbjct: 61 SYIGFKGFEDLGGGLKASFTLGAFYRIDDGAYGRFGGDTFFARDANVALSGSFGKLMLGR 120 Query: 118 QDS----PLYDYAAPMDPLSGALAFTRIFTQANKY-----RRD---NNTIKYASPTLGGF 165 PLY + D S + N + R D +N+I Y SPT G Sbjct: 121 MTPPTTLPLYMFNPVEDSFSLSPLVLHTIVGTNVFPGTFGRTDSAWSNSIAYTSPTFAGL 180 Query: 166 KGQLAYSFGETAGASASGRLLSAGLNYTRGASSSSLSMQNINSQAVGN--------NGIK 217 L Y FGE AG S+ + L Y G + L+ ++ VGN NG Sbjct: 181 TFNLHYQFGEAAGNSSKNNKGANAL-YQNGPLALGLAYHDVQ---VGNPVDNPIVPNGPS 236 Query: 218 TI----------------RLVNLGTRYDFKVAAVSLMMQTNKSNEGAKAMDSRDFLAGVS 261 + +L +G YDF + + +++ D L G+S Sbjct: 237 VMLSVPVPGGPNLVATRQKLAFVGGSYDF--SYLKFFATYDRATHDVDLKDQTGTL-GLS 293 Query: 262 VPLGAHKISASVIVHKDRKQASGDARQ--LALGYTYGLSPRTHLYGGMAHISNNKSARF 318 VPLG K+ +V K D ++ +++GY Y LS RT LY + + N+K+ + Sbjct: 294 VPLGNGKLLGAVAQTKRESALFSDVKRTTVSVGYDYFLSKRTDLY---SFLMNDKTTDY 349 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 738,035 Number of extensions: 28313 Number of successful extensions: 101 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 74 Number of HSP's successfully gapped: 9 Length of query: 345 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 261 Effective length of database: 910,473 Effective search space: 237633453 Effective search space used: 237633453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 130 (54.7 bits)