BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2615.p (260 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 253 1e-68 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 220 5e-59 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 154 5e-39 gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport ... 147 6e-37 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 146 1e-36 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 253 bits (645), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 130/247 (52%), Positives = 170/247 (68%), Gaps = 10/247 (4%) Query: 10 PLVVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYIL 69 PL+ I +V K +G+++VLKGI +DV GEV+ I+G SGSGKSTLLRCIN LESID+G I Sbjct: 2 PLIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSIS 61 Query: 70 LDGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRE 129 + G +G S+ EL R K GM+FQQFNL+PHL+ +N+M +P+ V Sbjct: 62 VAGSHLGK----------SELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVS 111 Query: 130 RGTVEQEALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTSALDP 189 A++ LE+VGL K ++P QLSGGQQQRVAIARAL+++PQ LL DE TSALDP Sbjct: 112 EKDARALAMKNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDP 171 Query: 190 ELVGEVLATMRSLAEQGLTMIVVTHEIGFAREAADRVIFMDGGKVLEAGPPDEVISRPQH 249 ELV EVL +R LA +G+T+I+VTHE+ FARE DRV+FM GKV E G P+++ + P Sbjct: 172 ELVNEVLNVVRGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPAT 231 Query: 250 GRTRAFL 256 + FL Sbjct: 232 PELKQFL 238 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 220 bits (561), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 114/250 (45%), Positives = 157/250 (62%), Gaps = 10/250 (4%) Query: 11 LVVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYILL 70 ++ + V K +G +VL V G+VVV+ GPSGSGKSTL++ +N LE QG I + Sbjct: 1 MIELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITV 60 Query: 71 DGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRER 130 DG +G + LS R + GMVFQ F L+PHL+ +N+ A + V R Sbjct: 61 DGISVGD----------PKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSL 110 Query: 131 GTVEQEALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTSALDPE 190 + L+ L++VGL A +P QLSGGQQQRVAIARAL++ P +LFDEPTSALDPE Sbjct: 111 PDATERGLKYLDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPE 170 Query: 191 LVGEVLATMRSLAEQGLTMIVVTHEIGFAREAADRVIFMDGGKVLEAGPPDEVISRPQHG 250 ++ EVL M LA++G+TM+VVTHE+GFA++ A+RVIFMD G ++E DE + Sbjct: 171 MINEVLDVMVGLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSD 230 Query: 251 RTRAFLSRFL 260 R R FL++ + Sbjct: 231 RARDFLAKII 240 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 154 bits (389), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 137/250 (54%), Gaps = 20/250 (8%) Query: 12 VVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYILLD 71 + ++++ K+FG L + +D GE+ +LGPSG GK+TLLR I LE D G +LLD Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 72 GEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEA----PLHVHH 127 GE R + R+ G VFQ + L+ H+T +N+ P Sbjct: 63 GEDASARH--------------VRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRP 108 Query: 128 RERGTVEQEALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTSAL 187 E ++++ +LLE V L A YP QLSGGQ+QR+A+ARALAV+P++LL DEP AL Sbjct: 109 SE-SQIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGAL 167 Query: 188 DPELVGEVLATMRSLAEQ-GLTMIVVTHEIGFAREAADRVIFMDGGKVLEAGPPDEVISR 246 D ++ E+ +R L + +T I VTH+ A E AD+++ M+ G V + G P +V + Sbjct: 168 DAKVRKELRRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNN 227 Query: 247 PQHGRTRAFL 256 P FL Sbjct: 228 PASPFVYGFL 237 >gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 262 Score = 147 bits (371), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 98/239 (41%), Positives = 140/239 (58%), Gaps = 18/239 (7%) Query: 11 LVVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYILL 70 ++ + DV R+G L+ + +H G+ V+LG SG+GKSTLLRCIN + G I + Sbjct: 1 MIQLNDVSVRYGDTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTIDV 60 Query: 71 DGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRER 130 G +G Q+ R++ QA RR+TGMVFQQ L TALQNV+ L H R Sbjct: 61 VG--LGLLQN----RRVLQAH----RRQTGMVFQQHQLIARRTALQNVLMGRLGYHTTLR 110 Query: 131 GT--VEQE----ALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPT 184 + QE L+ L++VGL KA QLSGGQQQRV IARAL +P+L+L DEP Sbjct: 111 SLFPLSQEEQRIGLRALDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPV 170 Query: 185 SALDPELVGEVLATMRSLA-EQGLTMIVVTHEIGFAREAADRVIFMDGGKVL-EAGPPD 241 ++LDP +VL +R + E G++ +V H++ A + +DR++ + GKV+ +A P D Sbjct: 171 ASLDPATSEKVLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAHGKVMFDAVPTD 229 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 146 bits (369), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 141/251 (56%), Gaps = 20/251 (7%) Query: 11 LVVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYILL 70 L+ IR++ +RFG + V+ I + + GE +LGPSG GK+TLLR I + D G ILL Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILL 62 Query: 71 DGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRER 130 DG + + ++R VFQ + L+PH+T N+ PL + + + Sbjct: 63 DGVDL--------------TGVPPEQRPVRTVFQNYALFPHMTVGGNI-AFPLEMANTPK 107 Query: 131 GTVEQEALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTSALDPE 190 ++++ + LE V L A YP +LSGGQ+QRV+IARAL +P+LLL DEP SALD + Sbjct: 108 AEIQKKVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQ 167 Query: 191 LVGEVLATMRSL-AEQGLTMIVVTHEIGFAREAADRVIFMDGGKVLEAGPPDEVISRPQH 249 L ++ + +L E G+T I VTH+ A + R+ M+ G+V + P + S P Sbjct: 168 LREQMQIELINLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYP-- 225 Query: 250 GRTRAFLSRFL 260 R+R F++ F+ Sbjct: 226 -RSR-FVADFI 234 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 606,372 Number of extensions: 24988 Number of successful extensions: 323 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 66 Length of query: 260 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 179 Effective length of database: 921,564 Effective search space: 164959956 Effective search space used: 164959956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)