BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2614.p
         (313 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr...    81   8e-17
gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s...    73   2e-14
gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr...    72   3e-14

>gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate
           transport system permease protein [Janthinobacterium sp.
           Marseille]
          Length = 228

 Score = 81.3 bits (199), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 9/221 (4%)

Query: 66  PSVLRGLGVTLGLTAISMVLGSLLGLVLAIARLSRTSLLRYIAGLYIWFFRSTPLLVQLI 125
           P +L GL  TL LT ++   G + G +LA+ARLS    L  IA  Y+   RS PLL+ + 
Sbjct: 14  PYLLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNLMRSIPLLLVIF 73

Query: 126 FLYNMATLFPEISVGLPFGPTWLSWKTNDLITPLTAAIIGLTLNEAAYMAEIIRGGLLAV 185
           + Y +  +  +   G    P  L    +  IT          + EAAY  EI+R G+ ++
Sbjct: 74  WFYFLMPIVLQTITGSE-RPVQLGADRSAYIT--------FIMFEAAYFCEIMRAGIQSI 124

Query: 186 DPRQLETAQAFGASRWCALRRILIPQAMRSIVPPTGNQLISMLKATSLVSVIAMGDLLHS 245
              Q+    A G +   +++ +++PQA R+++P    Q I + +  SLVS++ + D + +
Sbjct: 125 SKGQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGA 184

Query: 246 VQTVYNQTFEVIPLLIVAVCWYLTLTSLLNWVQSAIERHYG 286
              V  +   V+ + +     Y  L+  L+ +   +++ + 
Sbjct: 185 AVKVAQRDSRVVEMYLFVAIVYFVLSFALSTLVKQLQKRFA 225


>gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport
           system, permease component [Janthinobacterium sp.
           Marseille]
          Length = 218

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 18/189 (9%)

Query: 97  RLSRTSLLRYIAGLYIWFFRSTPLLVQLIFLYNMATLFPEISVGLPFGPTWLSWKTNDLI 156
           R S++  LR +A +YI  F+ TPLL+QL  ++    LF  I V     P WL        
Sbjct: 42  RTSKSGALRNVARIYIEIFQGTPLLMQLFLVFFGIALF-GIEV-----PAWL-------- 87

Query: 157 TPLTAAIIGLTLNEAAYMAEIIRGGLLAVDPRQLETAQAFGASRWCALRRILIPQAMRSI 216
               AA + LTL  A+++AEI RG + A+   Q E +     +    +R +++PQA+R  
Sbjct: 88  ----AAGLTLTLWSASFLAEIWRGCVEAIPRGQWEASSVLAMNYVQQMRYVILPQALRIA 143

Query: 217 VPPTGNQLISMLKATSLVSVIAMGDLLHSVQTVYNQTFEVIPLLIVAVCWYLTLTSLLNW 276
           +PPT    + ++K T++ S+I   +L  +   + N TF    +   A  +Y  L   L+ 
Sbjct: 144 LPPTIGFSVQIIKGTAVTSIIGFVELSKAATVITNATFMPFTVYAAAGLFYFILCWPLSR 203

Query: 277 VQSAIERHY 285
               +ER +
Sbjct: 204 YSQFLERKF 212


>gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type
           transport system permease protein [Janthinobacterium sp.
           Marseille]
          Length = 243

 Score = 72.4 bits (176), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 13/225 (5%)

Query: 62  WLSAPSVLRGLGVTLGLTAISMVLGSLLGLVLAIARLSRTSLLRYIAGLYIWFFRSTPLL 121
           WL   S+L GLG TL +   + +   ++G ++ + R S    L  + G Y+  FR+ PLL
Sbjct: 17  WLE--SLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAYVELFRNIPLL 74

Query: 122 VQLIFLYNMA-TLFPEISV-GLPFGPTWLSWKTNDLITPLTAAIIGLTLNEAAYMAEIIR 179
           VQ    Y +   L P +    +   PT      +  +T    A++ L    ++ +AE +R
Sbjct: 75  VQFFVWYFVVPGLVPAVKAWVITLDPT-----EHQFVT----AVVCLGFFTSSRIAEQVR 125

Query: 180 GGLLAVDPRQLETAQAFGASRWCALRRILIPQAMRSIVPPTGNQLISMLKATSLVSVIAM 239
            G+ A+   Q     A G +     R +L+P A R I+PP  ++L++++K T++   I +
Sbjct: 126 SGIQALPRGQRNAGYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGL 185

Query: 240 GDLLHSVQTVYNQTFEVIPLLIVAVCWYLTLTSLLNWVQSAIERH 284
            +L    + +   TF        A   Y+ +    N + + +ER 
Sbjct: 186 VELFFRTREMGEMTFRYFEAFGAATLIYVVIAMTANRLMALVERR 230


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 624,789
Number of extensions: 21904
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 4
Length of query: 313
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 230
Effective length of database: 914,170
Effective search space: 210259100
Effective search space used: 210259100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)