BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2609.p (547 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 387 e-108 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 375 e-105 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 369 e-103 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 365 e-102 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 360 e-100 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust. Identities = 241/515 (46%), Positives = 336/515 (65%), Gaps = 8/515 (1%) Query: 3 LANFNIGVRLGGAFAVVL-LLIVVTAMVGIRNQSSNNAEINSIVNEKYQLIALSN--QIK 59 +AN I +L +F VV LL+V+T + I+ NN+ I I ++Y L+N QI+ Sbjct: 4 IANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNS-IKLISKDRYPKTILANSVQIE 62 Query: 60 NNGYKANAVLSNILLATTPEASAKYMDEYAGLRKANTEAYQKLEGLLDSDKTKALYAEQT 119 N N L +I+L++ P + + + K E ++L + +++ + Sbjct: 63 VNKIALN--LRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSAAI 120 Query: 120 SARSAYGVAVRKFFALMKDEQRAEATTLYQGDMSRLQGEYFVMVDKMVNSLAKEMVNDSL 179 AR Y A L +D + AEA T +Q +YF+ +D M + ++N + Sbjct: 121 VARDQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFD-YQGSLMNVAG 179 Query: 180 EAAEEGRMAVIQMI-VLAGVAVVLASVIGVLITRSITAPVRHAVMLAETVAQGDLSYRLQ 238 +AA + +I +LAG++++L+ +G +TRSIT P+ AV +A VAQGDLS + Sbjct: 180 DAASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGPVF 239 Query: 239 ANGKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMSLSDRTEQQASSL 298 +E+ +L+ AL+ M+DNLH V+ VRNGT I A+ E+A+GNM LS RTEQQASSL Sbjct: 240 VKTTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASSL 299 Query: 299 EETASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNIMSAISTSSGKIA 358 EETASAME+LTS VR+NADNA+QA++LA SA+ VA +GG+ V +V+ M+AI+TSS KIA Sbjct: 300 EETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKIA 359 Query: 359 DIITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAVAAKEIKSLIE 418 DI VID IAFQTN+LALNAAVEAARAGE GRGFAVVASEVR LAQRSA AA EIK+LI+ Sbjct: 360 DITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALID 419 Query: 419 GSVNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGIEQINQAISQMDQ 478 SV V GS +V+Q TIDEV+ S+ + ++ IS +S+EQS GIEQ+ QAI Q+D+ Sbjct: 420 DSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQIDE 479 Query: 479 MTQENSALVEQNAAAAKALQSQAEQLSALMGRFKL 513 TQ+N+ALVEQ+AAAA++L+ QA+QL L+ FKL Sbjct: 480 GTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKL 514 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 375 bits (964), Expect = e-105, Method: Compositional matrix adjust. Identities = 238/520 (45%), Positives = 333/520 (64%), Gaps = 3/520 (0%) Query: 3 LANFNIGVRLGGAFAVVLLLIVVTAMVGIRNQSSNNAEINSIVNEKYQLIALSNQIKNNG 62 + N IG RL +F +++L+VV A + N I+ + ++Y L+N +K++ Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 63 YKANAVLSNILLATTPEASAKYMDEYAGLRKANTEAYQKLEGLLDSDKTKALYAEQTSAR 122 + + N LL T A + + + A +LE + S++ + A + R Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 123 SAYGVAVRKFFALMKDEQRAEATTLYQGDMSRLQGEYFVMVDKMVNSLAKEMVNDSLEAA 182 S + F L + EA L ++ Q Y +DK+++ + M EA Sbjct: 121 SKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEAN 180 Query: 183 EEGRMAVIQMIVLAGVAVVLASVIGVLITRSITAPVRHAVMLAETVAQGDLSYRLQANGK 242 + + + + + +AV++A+V VL TRSIT P+ AV+LA VA GDL+ + K Sbjct: 181 AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESK 240 Query: 243 DEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMSLSDRTEQQASSLEETA 302 DE +LL AL+ M++ L V+ VR GT I A+ ++A GN+ LS RTEQQASSLEETA Sbjct: 241 DETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETA 300 Query: 303 SAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNIMSAISTSSGKIADIIT 362 S+ME+LTS V+QNA+NARQ+++LA+SAS+VAVRGGA V +VV+ M I+ S+ KI DII Sbjct: 301 SSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIG 360 Query: 363 VIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAVAAKEIKSLIEGSVN 422 VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVASEVR LAQRSA AAKEIK LI SV+ Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVD 420 Query: 423 HVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGIEQINQAISQMDQMTQE 482 V GS +V+ AT+ EV+ S+K TD++++I+A+S+EQ++GIEQINQA+ QMDQ+TQ+ Sbjct: 421 KVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 483 NSALVEQNAAAAKALQSQAEQLSALMGRFKLSELLTHGTT 522 N+ALVE+ AAAA++LQ QA LS ++G FKL HGTT Sbjct: 481 NAALVEEAAAAAESLQGQASHLSQVVGVFKLD---GHGTT 517 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 369 bits (947), Expect = e-103, Method: Compositional matrix adjust. Identities = 240/515 (46%), Positives = 336/515 (65%), Gaps = 8/515 (1%) Query: 3 LANFNIGVRLGGAFAVVLLLIVVTAMVGIRNQSSNNAEINSIVNEKYQLIALSNQIKNNG 62 + N IG RL +F V+ +++V A++ +A I + N++Y ++ IK+ Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 63 YKANAVLSNILLATTPEASAKYMDEYAGLRKANT---EAYQKLEGLLDSDKTKALYAEQT 119 + + N LL T +A+ E + K + EA KL+ + S+K + T Sbjct: 61 NETARNMRNALLMTD---AAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALT 117 Query: 120 SARSAYGVAVRKFFALMKDEQRAEATTLYQGDMSRLQGEYFVMVDKMVNSLAKEMVNDSL 179 AR + KF AL+ RAEA L ++ Q EY + +D++V +++ + Sbjct: 118 DARGRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLV-EFQSNLMHKAG 176 Query: 180 EAAEEGRMAVIQMI-VLAGVAVVLASVIGVLITRSITAPVRHAVMLAETVAQGDLSYRLQ 238 E A E Q++ +L+ +AV++++ +G L TRSIT P+ AV LA VA GDL+ + Sbjct: 177 EDAHEVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIV 236 Query: 239 ANGKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMSLSDRTEQQASSL 298 KDE +LL ALQ M++ L V+ VR GT I A+ ++A GN+ LS RTE+QASSL Sbjct: 237 VTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSL 296 Query: 299 EETASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNIMSAISTSSGKIA 358 EETAS+ME+LTS V+QNADNARQ+++LA++AS+VAVRGGA V QVV M +I+ S+ KI Sbjct: 297 EETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIV 356 Query: 359 DIITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAVAAKEIKSLIE 418 DII VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVASEVR LAQRSA AAKEIK+LI+ Sbjct: 357 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLID 416 Query: 419 GSVNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGIEQINQAISQMDQ 478 SV V GS +V T+ EV+ S++ TD++ +I+A+S+EQ++GIEQINQA+ QMDQ Sbjct: 417 DSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQ 476 Query: 479 MTQENSALVEQNAAAAKALQSQAEQLSALMGRFKL 513 +TQ+N+ALVE+ AAAA++LQ QA LS ++ FKL Sbjct: 477 VTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKL 511 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 365 bits (937), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/522 (46%), Positives = 329/522 (63%), Gaps = 22/522 (4%) Query: 3 LANFNIGVRLGGAFAVVLLLIVVTAMVGIRNQSSNNAEINSIVNEKYQL-IALSNQIKNN 61 +N IG RL F VVL L + A GIR + +++I +L IA + + Sbjct: 4 FSNMKIGARLMLGFGVVLALSIAIAADGIRQLHA----VSAITRSMLELPIAKERMVSDW 59 Query: 62 GYKANAVLSNIL--LATTPEASAKYMDEYAGL-RKANTEAYQKLEGLLDSDKTKALYAEQ 118 A ++ + + A A++ ++A K + E QKLE LL++D+ K LYA+ Sbjct: 60 AAITKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKI 119 Query: 119 TSARSAYGVAVRKFFALMKDEQRAEA------TTLYQGDMSRLQGEYFVMVDKMVNSLAK 172 R ++ L + + AEA T L D + FV +++ Sbjct: 120 LDVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGT 179 Query: 173 EMVNDSLEAAEEGRMAVIQMIVLA-GVAVVLASVIGVLITRSITAPVRHAVMLAETVAQG 231 ++D +EAA ++ ++ +VLA G+ IG IT P++ AV A VA G Sbjct: 180 AQLSD-VEAASTRQLMLLSAMVLAFGIFCAWRLTIG------ITRPLKTAVDAARRVAGG 232 Query: 232 DLSYRLQANGKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMSLSDRT 291 DL+ ++A KDE +LL AL+ M+D L V VR GT I A+ E+A GN+ LS RT Sbjct: 233 DLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRT 292 Query: 292 EQQASSLEETASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNIMSAIS 351 EQQASSLEETAS+ME+LTS V+QNADNARQA++LAVSAS+VA++GG V QVV MS+I+ Sbjct: 293 EQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSIN 352 Query: 352 TSSGKIADIITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAVAAK 411 SS KI DII+VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVA+EVR LAQRSA AAK Sbjct: 353 ESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAK 412 Query: 412 EIKSLIEGSVNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGIEQINQ 471 EIK+LI SV V G+ +V + AT+DE++ SI+ TD++ +I+A+S+EQS GIEQINQ Sbjct: 413 EIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQ 472 Query: 472 AISQMDQMTQENSALVEQNAAAAKALQSQAEQLSALMGRFKL 513 AI QMD +TQ+N++LVE+ AAAA+++Q QA +L ++G FKL Sbjct: 473 AIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 360 bits (924), Expect = e-100, Method: Compositional matrix adjust. Identities = 239/525 (45%), Positives = 341/525 (64%), Gaps = 24/525 (4%) Query: 1 MKLANFNIGVRLGGAFAVVLLLIVVTAMVGI-RNQSSNNAEINSIVNEKYQLIALSNQIK 59 MK+ N I RL FA++L L+V+ +VGI R Q E+ + + Q + ++ Sbjct: 1 MKITNLKISTRLSFGFALLLTLMVMMTVVGILRLQ-----EVGTSADVMTQTMLPKERLA 55 Query: 60 NNGYKANAVLSNILLATTPEASA-------KYMDEYAGLRKANTEAYQKLEGLLDSDKTK 112 A V LA+ SA K MD+ + +AN E +++E ++ + + K Sbjct: 56 QEWLSAVDVNGARTLASAKTTSAEDQAFFQKQMDKTS--VRAN-ELQKEIESMIKTPEDK 112 Query: 113 ALYAEQTSARSAYGVAVRKFFALMKDEQRAEATTLYQGDMSRLQGEYFVMVDKMVNSLAK 172 L+ E AR+AY + F L + + EA L M Y +D ++ + K Sbjct: 113 RLFEELVVARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQN-EK 171 Query: 173 EMVND---SLEAAE-EGRMAVIQMIVLAGVAVVLASVIGVLITRSITAPVRHAVMLAETV 228 +++++ S+++A GR +I ++ AV L + SIT P+ AV +A TV Sbjct: 172 KLIDEAGTSIQSAFLSGRSLLIGLL---AAAVALGVFFAWRLAISITRPLNRAVTVARTV 228 Query: 229 AQGDLSYRLQANGKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMSLS 288 A GDLS +++ + DE +L+ AL+ M+ +L+ TVS VR+GT I A+R++A GN+ LS Sbjct: 229 ASGDLSAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLS 288 Query: 289 DRTEQQASSLEETASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNIMS 348 RTE+QASSL ETA++M QLTS VRQNADNARQA+ LA+SASDVAV+GG+ V +VV+ M+ Sbjct: 289 SRTEEQASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMA 348 Query: 349 AISTSSGKIADIITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAV 408 +I+ S+ KI DII+VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVASEVR LAQRSA Sbjct: 349 SINESARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAA 408 Query: 409 AAKEIKSLIEGSVNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGIEQ 468 AAKEIK LI SV V+AGS +V + +T++E++ S+K TD++ +I A+S+EQS GI+Q Sbjct: 409 AAKEIKILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQ 468 Query: 469 INQAISQMDQMTQENSALVEQNAAAAKALQSQAEQLSALMGRFKL 513 +NQAI QMDQ+TQ+N+ALVE+ AAAA++LQ QA L+ ++ +FKL Sbjct: 469 VNQAIGQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKL 513 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.124 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 887,823 Number of extensions: 28400 Number of successful extensions: 226 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 21 Length of query: 547 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 459 Effective length of database: 895,685 Effective search space: 411119415 Effective search space used: 411119415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)