BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2608.p
         (858 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980216|ref|YP_001353202.1| 2-oxoglutarate dehydrogenase E1...   622   e-179

>gi|152980216|ref|YP_001353202.1| 2-oxoglutarate dehydrogenase E1
           component [Janthinobacterium sp. Marseille]
          Length = 952

 Score =  622 bits (1604), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 349/867 (40%), Positives = 500/867 (57%), Gaps = 50/867 (5%)

Query: 24  VQSFIEAYRNEGYRIADIDPLGTISLPEIAALLPQTHALEDED--IILAQHRLLDGLGLT 81
           V   I AYR  G   A++DPL     P I  L P  +   D D  I+        G   +
Sbjct: 94  VTQLIAAYRVLGNNWANLDPLQRQERPPIPQLEPSFYGFTDADMDIVFNISNTHFGSETS 153

Query: 82  TVKELTHHLSRLFCAALALDASGVRDEARRQWLFARLAARDHGAEPDAPERAAVLARLAA 141
           ++++L + L   +C ++  +   + D A++ WL  R  +        + ++  +L RL A
Sbjct: 154 SLRDLLNALRDTYCRSIGPEFMYISDPAQKLWLQERFESVRSTPTFSSEKKKHILERLTA 213

Query: 142 AEQWEHYLQQDYPQAKRFSLEGCESLLLLMDALVERSSFYQLDQLFMAMPHRGRLNLLVN 201
           AE  E YL   Y   KRFSLEG ES +  +D +++R     + ++ + M HRGRLN+LVN
Sbjct: 214 AEGLERYLHTKYVGQKRFSLEGSESFIAALDEVIQRGGEKGVQEIVIGMAHRGRLNVLVN 273

Query: 202 LMQMPAAEIVAYFDPERTTPAAANAVDLPYHLGAQTVRATAHGKVGLLLAHNPSHLESAY 261
            +     E+ A F+        +   D+ YH G  +  +T  G + L LA NPSHLE   
Sbjct: 274 TLGKMPQELFAEFEGRHGDDLPSG--DVKYHQGFSSDISTPGGPIHLSLAFNPSHLEIVN 331

Query: 262 PVLLGMTRGYRARHPQAP-----LPASVVIHGDAAFCGQGVVMESLKLAQHPGYGVGGTV 316
           PV+ G  R    R  Q       LP  ++IHGDAAF GQGV+ME+L LAQ  GYG GGTV
Sbjct: 332 PVVEGSVRARIERRGQNDPSQQVLP--ILIHGDAAFAGQGVIMETLNLAQTRGYGTGGTV 389

Query: 317 HVIVNNQIGFTTPNPLDPENHGYCTDIARIVGAPVLHVNADQPEMVLRAARIAFDYRMQF 376
           H+I+NNQIGFTT +P D  +  YCTD+++++ APV+HVN D PE V+ AA++A DYR++F
Sbjct: 390 HIIINNQIGFTTSDPRDSRSTLYCTDVSKMIEAPVIHVNGDDPEAVVFAAQLALDYRLEF 449

Query: 377 GADVVIDLVGYRRWGHAEQDTATVTQPLLHGFIDKHPPVTQLYAQA----GWPGSEEGMA 432
             D+V+D+V YR+ GH EQDT  +TQPL++  I  HP   +LYA      G  G+EEG A
Sbjct: 450 RKDIVVDIVCYRKLGHNEQDTPALTQPLMYKKIAAHPGTRKLYADKLLTQGTIGAEEGDA 509

Query: 433 LLAA----------SSQQALAAFKA----------SRVGSAAAAAAVPVSPAPVAGPDLL 472
           ++            +    ++ FK+          +R  + AA  AVP          L 
Sbjct: 510 MVREYRDAMDAGKHTIDPVISNFKSKYAVDWMPFLNRKWTDAADTAVP----------LA 559

Query: 473 RIRQFVERMTHLPDGFEAHPTILRLIAQWQDCVSAPEQACSWNFAENMAYASLLAEGHGV 532
            +++  ER+T LP+ F+ HP + +++   +  +   E    W   E++AYASL++ G+ V
Sbjct: 560 ELKRLAERITTLPENFKVHPLVEKVLND-RAAMGRGEMNLDWGMGEHLAYASLVSSGYAV 618

Query: 533 RISGMDVQRGTFMQRHAVWHAVDTAQGVQQAYWPLRQVAAPSAALEVINSPLSEEAVVGF 592
           R++G D  RGTF+ RHAV H  +  +     Y PL+ ++   A   VI+S LSEEAV+ +
Sbjct: 619 RLTGQDSGRGTFVHRHAVLHDQNRERWDAGTYVPLQNISDQQAWFRVIDSVLSEEAVLAY 678

Query: 593 EYGFSVQAGANALVIWEAQFGDFVNGAQIMIDQYVTSGGGKWGYASALTLLLPHGYEGVG 652
           EYG+S  A  N LVIWEAQFGDFVNGAQ++IDQ+++SG  KWG AS L ++LPHGYEG G
Sbjct: 679 EYGYST-AEPNTLVIWEAQFGDFVNGAQVVIDQFISSGEVKWGRASGLVMMLPHGYEGQG 737

Query: 653 PEHSTGYLSRMLLLCAGQNIRVACPTTSAQWFHLLREQALQAER-PLVVFTPKSVLHAQA 711
           PEHS+    R L LCA  N++V  PTTSAQ FHLLR Q ++  R PLV+ TPKS+L  + 
Sbjct: 738 PEHSSARPERFLQLCADNNMQVVQPTTSAQIFHLLRRQMIRLFRKPLVILTPKSLLRNKD 797

Query: 712 RSHSPLSALLQGAFQP-LSDDPEAPPVQQVRRVVLCSGKVRHDLAAARSQTVNDETVLLS 770
            + SPL+ L++G+FQ  + +  +    ++V+RV+ CSG+V +DL AAR +    +  ++ 
Sbjct: 798 -AGSPLTDLVKGSFQTVIGEVDDKIDAKKVKRVIACSGRVYYDLVAARKERGQSDVAIIR 856

Query: 771 VEQLYPFPTQALGECLNSYPNLAEVIWVQEEERNQGAWLCVRDAIEAALPAGVPLRAVYR 830
           +EQLYPFP +A    L  +PN  E++W Q+E +NQGAW  ++  I   +  G  L    R
Sbjct: 857 IEQLYPFPHKAFAAELKKFPNFTELVWTQDEPQNQGAWFQIQHNILENMADGQKLAYAGR 916

Query: 831 PDTASGPTASKATHYAQQAALMQAVFA 857
           P +AS        HYAQQ AL+ A FA
Sbjct: 917 PASASPAVGYYDKHYAQQKALIDAAFA 943


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,993,806
Number of extensions: 83358
Number of successful extensions: 250
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 1
Length of query: 858
Length of database: 1,221,021
Length adjustment: 91
Effective length of query: 767
Effective length of database: 884,594
Effective search space: 678483598
Effective search space used: 678483598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)